View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5966-Insertion-5 (Length: 560)

Name: NF5966-Insertion-5
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5966-Insertion-5
NF5966-Insertion-5
[»] chr1 (14 HSPs)
chr1 (8-411)||(10991017-10991420)
chr1 (478-550)||(10991487-10991559)
chr1 (478-550)||(17653708-17653780)
chr1 (478-550)||(14650081-14650153)
chr1 (478-550)||(14659872-14659944)
chr1 (478-550)||(16100552-16100624)
chr1 (478-550)||(47050829-47050901)
chr1 (478-550)||(17479032-17479104)
chr1 (478-550)||(29289343-29289414)
chr1 (318-401)||(11025807-11025890)
chr1 (317-407)||(10992350-10992440)
chr1 (317-401)||(10930146-10930230)
chr1 (318-401)||(11040510-11040593)
chr1 (185-251)||(10992218-10992283)
[»] chr8 (5 HSPs)
chr8 (478-550)||(15924745-15924817)
chr8 (478-550)||(4706964-4707036)
chr8 (478-550)||(26340791-26340863)
chr8 (478-550)||(18982228-18982300)
chr8 (478-550)||(26917601-26917673)
[»] chr5 (3 HSPs)
chr5 (478-550)||(42785297-42785369)
chr5 (478-550)||(5519786-5519858)
chr5 (487-541)||(27198631-27198686)
[»] chr2 (6 HSPs)
chr2 (478-550)||(808983-809055)
chr2 (478-550)||(44323886-44323958)
chr2 (478-546)||(2587966-2588034)
chr2 (478-550)||(45331808-45331880)
chr2 (496-550)||(31713751-31713805)
chr2 (496-550)||(39154990-39155044)
[»] scaffold0438 (2 HSPs)
scaffold0438 (478-550)||(10952-11024)
scaffold0438 (478-550)||(7969-8041)
[»] chr4 (8 HSPs)
chr4 (478-550)||(27561471-27561543)
chr4 (478-550)||(54352161-54352233)
chr4 (478-550)||(4763809-4763881)
chr4 (478-554)||(5358917-5358993)
chr4 (478-550)||(18694482-18694554)
chr4 (505-550)||(27734061-27734106)
chr4 (487-550)||(11513079-11513142)
chr4 (487-550)||(51533468-51533531)
[»] chr6 (14 HSPs)
chr6 (478-550)||(22013778-22013850)
chr6 (478-550)||(25478573-25478645)
chr6 (478-554)||(33055443-33055519)
chr6 (478-550)||(28040508-28040580)
chr6 (478-550)||(33062830-33062902)
chr6 (478-550)||(27527048-27527121)
chr6 (487-548)||(27650859-27650921)
chr6 (496-550)||(27683904-27683958)
chr6 (496-550)||(27691223-27691277)
chr6 (506-550)||(9814784-9814829)
chr6 (505-550)||(13142487-13142532)
chr6 (511-550)||(6952087-6952126)
chr6 (481-550)||(17355291-17355358)
chr6 (479-550)||(30130033-30130105)
[»] chr3 (9 HSPs)
chr3 (478-550)||(19434814-19434886)
chr3 (478-550)||(28058765-28058837)
chr3 (478-550)||(28069190-28069262)
chr3 (478-550)||(28103623-28103695)
chr3 (478-550)||(6911646-6911718)
chr3 (478-550)||(5705854-5705926)
chr3 (478-550)||(11200502-11200576)
chr3 (478-541)||(17955084-17955146)
chr3 (505-550)||(17955271-17955316)
[»] chr7 (3 HSPs)
chr7 (481-550)||(28803368-28803437)
chr7 (505-550)||(36264729-36264774)
chr7 (505-550)||(44060367-44060413)
[»] scaffold0406 (1 HSPs)
scaffold0406 (478-550)||(3462-3533)
[»] scaffold0713 (1 HSPs)
scaffold0713 (481-550)||(596-664)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 10991017 - 10991420
Alignment:
Q  8 agatggatgaagaaatgtctaaacatagttcaccagattaaaacaaacataaaatatttgttgactaatagattatctaaccatggttaacttagtcatg 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991017 agatggatgaagaaatgtctaaacatagttcacctgattaaaacaaacataaaatatttgttgactaatagattatctaaccatggttaacttagtcatg 10991116  T
Q  108 acttagaattttcaattcttgtaaatatataatcaatctttaattgcatttaaaattatttcagaacattaacaaatataaactgagttttgcaagtttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991117 acttagaattttcaattcttgtaaatatataatcaatctttaattgcatttaaaattatttcagaacattaacaaatataaactgagttttgcaagtttg 10991216  T
Q  208 atttttataggttcatcaacgacgctagtcaacacaggtcagctatacattctgtattttctttattttaattatagcatgtaagaaaatcannnnnnnn 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  10991217 atttttataggttcatcaacgacgctagtcaacacaggtcagctatacattctgtattttctttattttaattatagcatgtaagaaaatcatttttttt 10991316  T
Q  308 nnaaattgtttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaa 407  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991317 ttaaattgtttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaa 10991416  T
Q  408 aggc 411  Q
    ||||    
T  10991417 aggc 10991420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 10991487 - 10991559
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10991487 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 10991559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 17653708 - 17653780
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  17653708 actttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 17653780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 14650153 - 14650081
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  14650153 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 14650081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 14659944 - 14659872
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  14659944 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 14659872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 16100624 - 16100552
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  16100624 actttaaataaagtatagaaatctaactttagtgaaaatactcaaatgggtgaatcgagaactagctccatct 16100552  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 47050829 - 47050901
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  47050829 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 47050901  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 17479032 - 17479104
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||| ||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  17479032 actttaaagaaaatataaaaatccaactttagtgacaataatcaaatgggtgaatcgagaactagctccatct 17479104  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 29289343 - 29289414
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  29289343 actttaaataaagtataaaaatctaactttggtgaaaataatcaaat-ggtgaatcgagaactagctccatct 29289414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 11025807 - 11025890
Alignment:
Q  318 tttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 401  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| | |  | || | |||| |||||||| |||||||||||    
T  11025807 tttcataaatgcaggatcaattttaggatcattgttttttatcttgttgattggtggaatctaccatatttatgactcttacat 11025890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 10992350 - 10992440
Alignment:
Q  317 ttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacattctgaa 407  Q
    ||||||||||| |||| |||||| |||||||  |||||||| ||||| | |||| ||||||||| ||  |||| ||||||||||| |||||    
T  10992350 ttttcataaatccaggatcaattctaggatcgctgttttttgtcttgttaaccggtgcagtctaccacgtttatgactcttacatactgaa 10992440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 401
Target Start/End: Original strand, 10930146 - 10930230
Alignment:
Q  317 ttttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 401  Q
    |||||||||||||||| ||||||||||| ||  | |||||| ||||| | || | |||| |||| |||||||| |||||||||||    
T  10930146 ttttcataaatgcaggatcaattttaggttcgttattttttgtcttgttgactggtgcaatctaccatatttatgactcttacat 10930230  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 11040510 - 11040593
Alignment:
Q  318 tttcataaatgcagggtcaattttaggatcaatgttttttatcttgctcaccgctgcagtctatcatatttacgactcttacat 401  Q
    ||||||||||||||| ||||||||||||||  ||||||| |||||| | |  | || |||||  |||||||| |||||||||||    
T  11040510 tttcataaatgcaggatcaattttaggatcgttgtttttcatcttgttgattggtggagtcttccatatttatgactcttacat 11040593  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 10992218 - 10992283
Alignment:
Q  185 ataaactgagttttgcaagtttgatttttataggttcatcaacgacgctagtcaacacaggtcagct 251  Q
    ||||||| ||||| || ||| |||||||  |||||||||||||| | ||||||||||||||||||||    
T  10992218 ataaactaagtttggctagtatgattttg-taggttcatcaacggctctagtcaacacaggtcagct 10992283  T

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Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 15924817 - 15924745
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  15924817 actttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 15924745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 4706964 - 4707036
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||    
T  4706964 actttaaataaagtatagaaatccaagtttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 4707036  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 26340791 - 26340863
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  26340791 actttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatct 26340863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 18982300 - 18982228
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  18982300 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 18982228  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 26917601 - 26917673
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||| || |||||||| |||||||||||||| |||||||||| ||| |||||||||||||||| || |||||    
T  26917601 actttgaagaaagtataaaaatccaactttagcgaaaataatctaatgggtgaatcgagaactagcttcatct 26917673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 42785369 - 42785297
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  42785369 actttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 42785297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 5519786 - 5519858
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  5519786 actttaaataaattatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 5519858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 27198631 - 27198686
Alignment:
Q  487 aaagtatagaaatccaactttagtgaaaataatc-aaataggtgaatcgagaacta 541  Q
    |||||| | ||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  27198631 aaagtaaataaatccaactttaatgaaaataatcaaaatgggtgaatcgagaacta 27198686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 808983 - 809055
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  808983 actttaaataaagtatagaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 809055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 44323958 - 44323886
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||    
T  44323958 actttaaataaagtatagaaatccaagtttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 44323886  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 546
Target Start/End: Complemental strand, 2588034 - 2587966
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctcc 546  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||    
T  2588034 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctcc 2587966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 45331880 - 45331808
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  45331880 actttaaataaagtataaaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 45331808  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 31713805 - 31713751
Alignment:
Q  496 aaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||    
T  31713805 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatct 31713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 550
Target Start/End: Original strand, 39154990 - 39155044
Alignment:
Q  496 aaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||    
T  39154990 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatct 39155044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 10952 - 11024
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  10952 actttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatct 11024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 7969 - 8041
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||| ||||||||    
T  7969 actttaaataaagtatagaactccaacttcagtgaaaataatcaaatggttgaatcgagaactagctccatct 8041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 27561471 - 27561543
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  27561471 actttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatct 27561543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 54352161 - 54352233
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  54352161 actttaaataaagtataaaaatccaactttagtgaaaataatcaaatgggtgaatcgagaactagctccatct 54352233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 4763809 - 4763881
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  4763809 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 4763881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 5358917 - 5358993
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatcttgtt 554  Q
    |||||||||||||||||||||||||||||| || |||||||  |||| |||||||||||||||| ||||||||||||    
T  5358917 actttaaataaagtatagaaatccaacttttgtaaaaataaataaatgggtgaatcgagaactatctccatcttgtt 5358993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 18694482 - 18694554
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||| | ||||||| |||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  18694482 actttatagaaagtattgaaatccaactttaatgaaaataaccaaatgggtgaatcgagaactagctccatct 18694554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 27734061 - 27734106
Alignment:
Q  505 tttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||    
T  27734061 tttagtaaaaataatcaaatgggtgaatcgagaactatctccatct 27734106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 11513079 - 11513142
Alignment:
Q  487 aaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||| |||||||| ||||||||| |||   |||| | |||||||||||||||||||||||    
T  11513079 aaagtataaaaatccaattttagtgaatatatcaaaatggttgaatcgagaactacctccatct 11513142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 550
Target Start/End: Complemental strand, 51533531 - 51533468
Alignment:
Q  487 aaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||| ||||||||||||||   ||||||| |||||  ||||||||||||||| ||||||||    
T  51533531 aaagtattgaaatccaactttaactaaaataaccaaatgagtgaatcgagaactagctccatct 51533468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 22013850 - 22013778
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||    
T  22013850 actttaaataaagtatagaaatcctagtttagtgaaaataatcaaatgggtgaatcgagaactaactccatct 22013778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 25478573 - 25478645
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  25478573 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 25478645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 554
Target Start/End: Complemental strand, 33055519 - 33055443
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatcttgtt 554  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||||| ||||||||||||    
T  33055519 actttaaataaagtatagaaatttaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatcttgtt 33055443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 28040580 - 28040508
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  28040580 acttgaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactaactccatct 28040508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 33062902 - 33062830
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||| |||||||||||||||| || |||||    
T  33062902 actttaaataaagtatagaaatttaactttggtgaaaataatcaaatgggtgaatcgagaactagcttcatct 33062830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 27527121 - 27527048
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaat-aggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||| || |||||    
T  27527121 actttaaataaagtatagaaatcaaactttggtgaaaataatcaaatggggtgaatcgagaactagcttcatct 27527048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 27650921 - 27650859
Alignment:
Q  487 aaagtatagaaatccaactttagtgaaaataatc-aaataggtgaatcgagaactacctccat 548  Q
    |||||||| ||||||||||||||||||||||||| |||| | |||||||||||||| ||||||    
T  27650921 aaagtataaaaatccaactttagtgaaaataatcaaaatggatgaatcgagaactagctccat 27650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 27683958 - 27683904
Alignment:
Q  496 aaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||    
T  27683958 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatct 27683904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 27691277 - 27691223
Alignment:
Q  496 aaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||    
T  27691277 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatct 27691223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 550
Target Start/End: Complemental strand, 9814829 - 9814784
Alignment:
Q  506 ttagtgaaaataatcaaa-taggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  9814829 ttagtgaaaataatcaaaataggtgaatcgagaactagctccatct 9814784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 13142487 - 13142532
Alignment:
Q  505 tttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||    
T  13142487 tttagtgaaaataatcaaatgggtgaatcgagaactagctctatct 13142532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 550
Target Start/End: Complemental strand, 6952126 - 6952087
Alignment:
Q  511 gaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  6952126 gaaaataatcaaatgggtgaatcgagaactagctccatct 6952087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 17355358 - 17355291
Alignment:
Q  481 ttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||| |||||||| |||||||| |||  ||||||||||||| | |||||||||||||||| ||||||||    
T  17355358 ttaaagaaagtata-aaatccaattttt-tgaaaataatcaagtgggtgaatcgagaactagctccatct 17355291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 550
Target Start/End: Complemental strand, 30130105 - 30130033
Alignment:
Q  479 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaa-taggtgaatcgagaactacctccatct 550  Q
    ||||||| ||| ||||||||||    |||||| |||||||||||| | |||||||||||||||| ||||||||    
T  30130105 ctttaaagaaaatatagaaatctccatttagtaaaaataatcaaaatgggtgaatcgagaactagctccatct 30130033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 19434886 - 19434814
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  19434886 actttaaataaagtatagaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 19434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 28058765 - 28058837
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||    
T  28058765 actttaaataaagtatagaaatccaactttaatgaaaataatcaaatgggtgaatcgagcactagctccatct 28058837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 28069190 - 28069262
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||    
T  28069190 actttaaataaagtatagaaatccaactttaatgaaaataatcaaatgggtgaatcgagcactagctccatct 28069262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 28103695 - 28103623
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  28103695 actttaaataaagtataaaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatct 28103623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 6911646 - 6911718
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||  |||||||||||||||| ||||||||    
T  6911646 actttaaataaagtttagaaatctaactttggtgaaaataatcaaaggggtgaatcgagaactagctccatct 6911718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 5705854 - 5705926
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||| | ||||||| |||||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  5705854 actttatagaaagtattgaaatccaactttaatgaaaataaccaaatgggtgaatcgagaactagctccatct 5705926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 11200576 - 11200502
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaa--taggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||  | |||||||||||||||| ||||||||    
T  11200576 actttaaataaagtacataaattcaactttagtgaaaataatcaaaatttggtgaatcgagaactagctccatct 11200502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 541
Target Start/End: Original strand, 17955084 - 17955146
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaacta 541  Q
    |||||||| |||||||| || |||||||||| ||||||||||| ||| ||||||||||||||||    
T  17955084 actttaaagaaagtataaaactccaactttaatgaaaataatc-aatgggtgaatcgagaacta 17955146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 17955271 - 17955316
Alignment:
Q  505 tttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  17955271 tttagtgaaaataatcaaatgtgtgaatcgagaactagctccatct 17955316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 28803437 - 28803368
Alignment:
Q  481 ttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  28803437 ttaaataaagtatagaaattcaactttaatgaaaataatcaaatgggtgaatcgagaactagctccatct 28803368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 36264729 - 36264774
Alignment:
Q  505 tttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||    
T  36264729 tttagtcaaaataatcaaatgggtgaatcgagaactaactccatct 36264774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 44060367 - 44060413
Alignment:
Q  505 tttagtgaaaataatcaaa-taggtgaatcgagaactacctccatct 550  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||    
T  44060367 tttagtgaaaataaacaaaataggtgaatcgagaactagctccatct 44060413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 550
Target Start/End: Complemental strand, 3533 - 3462
Alignment:
Q  478 actttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||| ||||||||    
T  3533 actttaaataaagtatagaaatctaactttggtgaaaataatcaaa-cggtgaatcgagaactagctccatct 3462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 664 - 596
Alignment:
Q  481 ttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtgaatcgagaactacctccatct 550  Q
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T  664 ttaaagaaagtata-aaatccaatttttttgaaaataatcaagtgggtgaatcgagaactagctccatct 596  T

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