View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5966_high_3 (Length: 397)

Name: NF5966_high_3
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5966_high_3
NF5966_high_3
[»] chr5 (29 HSPs)
chr5 (10-331)||(3775146-3775468)
chr5 (26-95)||(12576955-12577025)
chr5 (120-177)||(27998574-27998631)
chr5 (119-172)||(14667909-14667962)
chr5 (119-177)||(2066130-2066188)
chr5 (44-101)||(2713055-2713113)
chr5 (119-177)||(2713077-2713135)
chr5 (119-177)||(12576951-12577009)
chr5 (44-101)||(14749418-14749476)
chr5 (43-96)||(15489604-15489658)
chr5 (119-176)||(10082836-10082893)
chr5 (58-110)||(18698896-18698949)
chr5 (43-102)||(6859491-6859551)
chr5 (26-176)||(42199420-42199580)
chr5 (28-102)||(7359357-7359432)
chr5 (144-179)||(33157947-33157982)
chr5 (139-177)||(28015-28053)
chr5 (139-177)||(6859514-6859552)
chr5 (19-95)||(9235166-9235241)
chr5 (119-177)||(14749440-14749498)
chr5 (139-177)||(15489603-15489641)
chr5 (139-177)||(29922417-29922455)
chr5 (119-177)||(30588580-30588638)
chr5 (119-177)||(33667568-33667626)
chr5 (119-177)||(38684613-38684671)
chr5 (26-119)||(42199379-42199473)
chr5 (26-102)||(7678588-7678665)
chr5 (48-89)||(32516679-32516720)
chr5 (141-177)||(1001295-1001331)
[»] chr1 (38 HSPs)
chr1 (27-119)||(38868975-38869068)
chr1 (119-179)||(8203225-8203285)
chr1 (119-179)||(38869013-38869073)
chr1 (44-102)||(853898-853957)
chr1 (119-178)||(19969303-19969362)
chr1 (26-103)||(6025714-6025792)
chr1 (19-95)||(29577230-29577307)
chr1 (119-179)||(40416502-40416562)
chr1 (62-120)||(49377416-49377475)
chr1 (119-177)||(3818947-3819005)
chr1 (119-177)||(6025738-6025796)
chr1 (119-177)||(7083023-7083081)
chr1 (119-177)||(8342972-8343030)
chr1 (119-177)||(30834068-30834126)
chr1 (30-119)||(43423812-43423902)
chr1 (26-102)||(8796319-8796396)
chr1 (26-102)||(40416481-40416558)
chr1 (45-101)||(51584855-51584912)
chr1 (44-110)||(10272360-10272427)
chr1 (141-176)||(12261826-12261861)
chr1 (13-119)||(44008672-44008779)
chr1 (142-177)||(51584877-51584912)
chr1 (26-83)||(8203229-8203287)
chr1 (119-177)||(28528488-28528546)
chr1 (26-103)||(30834072-30834150)
chr1 (46-103)||(33560973-33561031)
chr1 (26-103)||(42501217-42501295)
chr1 (119-173)||(42501245-42501299)
chr1 (119-177)||(50771647-50771705)
chr1 (66-104)||(52073188-52073226)
chr1 (26-98)||(8342976-8343049)
chr1 (120-177)||(17815612-17815669)
chr1 (150-179)||(29807987-29808016)
chr1 (120-177)||(32404618-32404675)
chr1 (26-102)||(32404621-32404698)
chr1 (148-177)||(34827224-34827253)
chr1 (44-119)||(50806762-50806838)
chr1 (43-95)||(51812627-51812679)
[»] chr4 (51 HSPs)
chr4 (29-104)||(8459133-8459209)
chr4 (29-119)||(44667343-44667434)
chr4 (26-119)||(7682005-7682099)
chr4 (43-103)||(38903830-38903890)
chr4 (43-102)||(49987518-49987578)
chr4 (29-119)||(44686668-44686759)
chr4 (43-101)||(53540401-53540460)
chr4 (26-112)||(54470307-54470394)
chr4 (43-96)||(18966721-18966775)
chr4 (26-110)||(47147475-47147560)
chr4 (119-175)||(10209171-10209227)
chr4 (43-102)||(48033195-48033255)
chr4 (26-105)||(934526-934605)
chr4 (139-178)||(8599052-8599091)
chr4 (26-104)||(42293360-42293439)
chr4 (26-96)||(45569104-45569175)
chr4 (119-182)||(54470335-54470398)
chr4 (119-177)||(47147506-47147564)
chr4 (139-177)||(49987541-49987579)
chr4 (46-95)||(16191595-16191644)
chr4 (11-103)||(40018269-40018362)
chr4 (36-100)||(40268368-40268433)
chr4 (119-171)||(934522-934574)
chr4 (119-175)||(31961357-31961413)
chr4 (139-175)||(37488226-37488262)
chr4 (119-171)||(42639111-42639163)
chr4 (119-175)||(50680875-50680931)
chr4 (119-170)||(21214677-21214728)
chr4 (26-116)||(31961361-31961452)
chr4 (43-100)||(13805377-13805435)
chr4 (119-177)||(20999133-20999191)
chr4 (139-177)||(21107125-21107163)
chr4 (119-177)||(26356752-26356810)
chr4 (26-103)||(30853452-30853530)
chr4 (43-104)||(43069930-43069992)
chr4 (26-119)||(44641901-44641995)
chr4 (139-177)||(45204950-45204988)
chr4 (139-176)||(28351693-28351730)
chr4 (142-175)||(35555761-35555794)
chr4 (148-177)||(35690404-35690433)
chr4 (120-177)||(38903810-38903866)
chr4 (11-104)||(40933004-40933091)
chr4 (49-101)||(55579143-55579196)
chr4 (139-179)||(18966736-18966776)
chr4 (26-97)||(20999115-20999187)
chr4 (26-101)||(26356730-26356806)
chr4 (66-102)||(29398928-29398964)
chr4 (119-175)||(31897519-31897575)
chr4 (26-101)||(42639115-42639191)
chr4 (119-175)||(46372159-46372215)
chr4 (149-177)||(55809111-55809139)
[»] chr8 (35 HSPs)
chr8 (119-177)||(23023358-23023416)
chr8 (119-172)||(39967590-39967643)
chr8 (43-102)||(45512607-45512667)
chr8 (18-103)||(79136-79222)
chr8 (119-177)||(4011216-4011274)
chr8 (119-177)||(35643697-35643755)
chr8 (26-102)||(35643701-35643778)
chr8 (26-101)||(10080002-10080078)
chr8 (45-104)||(37826399-37826459)
chr8 (119-178)||(16351510-16351569)
chr8 (26-103)||(4011192-4011270)
chr8 (119-177)||(38178351-38178409)
chr8 (41-94)||(41444450-41444506)
chr8 (42-91)||(18737249-18737298)
chr8 (42-91)||(18742134-18742183)
chr8 (42-91)||(18747098-18747147)
chr8 (120-176)||(10108947-10109003)
chr8 (43-102)||(32931071-32931131)
chr8 (47-102)||(38178376-38178432)
chr8 (26-97)||(3079699-3079770)
chr8 (138-177)||(45419368-45419407)
chr8 (139-177)||(5908779-5908817)
chr8 (119-177)||(10079998-10080056)
chr8 (139-177)||(17491765-17491803)
chr8 (119-177)||(23492168-23492225)
chr8 (139-177)||(45512606-45512644)
chr8 (139-172)||(5127381-5127414)
chr8 (43-95)||(5127382-5127435)
chr8 (148-177)||(29709830-29709859)
chr8 (26-102)||(30783137-30783214)
chr8 (122-170)||(79167-79215)
chr8 (141-177)||(16994557-16994593)
chr8 (121-177)||(38391986-38392042)
chr8 (119-174)||(39388918-39388974)
chr8 (26-70)||(39967594-39967638)
[»] chr7 (31 HSPs)
chr7 (26-99)||(24549783-24549857)
chr7 (119-177)||(45601609-45601667)
chr7 (43-102)||(30814783-30814843)
chr7 (120-179)||(29653638-29653697)
chr7 (44-101)||(14593871-14593929)
chr7 (119-177)||(28628024-28628082)
chr7 (11-100)||(30144887-30144977)
chr7 (119-172)||(1569154-1569207)
chr7 (140-177)||(12966149-12966186)
chr7 (26-102)||(28628028-28628105)
chr7 (26-102)||(29653641-29653718)
chr7 (44-104)||(40830310-40830371)
chr7 (26-104)||(41461204-41461286)
chr7 (141-177)||(14593893-14593929)
chr7 (141-177)||(16013416-16013452)
chr7 (119-179)||(24549779-24549839)
chr7 (119-183)||(30144902-30144966)
chr7 (117-177)||(40830335-40830395)
chr7 (119-178)||(37976367-37976426)
chr7 (44-101)||(16013394-16013452)
chr7 (139-177)||(30814782-30814820)
chr7 (119-177)||(38135304-38135362)
chr7 (26-91)||(45601597-45601663)
chr7 (46-102)||(6420605-6420662)
chr7 (148-177)||(21517500-21517529)
chr7 (119-176)||(28858179-28858236)
chr7 (119-176)||(30664702-30664759)
chr7 (148-177)||(36136897-36136926)
chr7 (51-103)||(36245524-36245577)
chr7 (45-101)||(19119538-19119594)
chr7 (119-167)||(41461242-41461290)
[»] chr6 (15 HSPs)
chr6 (26-103)||(33997639-33997717)
chr6 (26-101)||(10617329-10617405)
chr6 (119-178)||(31818663-31818722)
chr6 (119-177)||(34596-34654)
chr6 (26-95)||(34600-34670)
chr6 (43-100)||(8364668-8364726)
chr6 (119-177)||(33997635-33997693)
chr6 (119-179)||(10617325-10617385)
chr6 (119-177)||(1747732-1747790)
chr6 (139-177)||(8364689-8364727)
chr6 (119-177)||(9593799-9593857)
chr6 (46-119)||(21870178-21870254)
chr6 (43-95)||(579535-579588)
chr6 (119-172)||(31831950-31832003)
chr6 (43-102)||(12134013-12134073)
[»] chr2 (27 HSPs)
chr2 (26-103)||(26784435-26784513)
chr2 (11-119)||(43832191-43832300)
chr2 (26-102)||(9556464-9556541)
chr2 (119-176)||(26784431-26784488)
chr2 (43-119)||(29548749-29548826)
chr2 (120-177)||(33287554-33287611)
chr2 (26-101)||(19235079-19235155)
chr2 (27-102)||(38435062-38435138)
chr2 (119-182)||(9556460-9556523)
chr2 (18-103)||(18188861-18188947)
chr2 (123-177)||(19235079-19235133)
chr2 (26-119)||(37470228-37470322)
chr2 (119-177)||(37481708-37481766)
chr2 (43-103)||(33504332-33504393)
chr2 (28-104)||(45640622-45640699)
chr2 (120-176)||(12026097-12026153)
chr2 (119-175)||(38435087-38435143)
chr2 (117-163)||(1626342-1626388)
chr2 (26-68)||(23915788-23915830)
chr2 (119-177)||(26670901-26670959)
chr2 (139-173)||(33504360-33504394)
chr2 (119-177)||(37452317-37452375)
chr2 (119-177)||(43832231-43832289)
chr2 (141-177)||(36869991-36870027)
chr2 (47-79)||(37363102-37363134)
chr2 (119-175)||(42543370-42543426)
chr2 (119-175)||(44437812-44437868)
[»] chr3 (36 HSPs)
chr3 (43-103)||(31261054-31261115)
chr3 (119-173)||(36820068-36820122)
chr3 (121-176)||(2340810-2340865)
chr3 (43-101)||(11581555-11581614)
chr3 (139-178)||(11581576-11581615)
chr3 (26-119)||(21200641-21200735)
chr3 (119-177)||(39600772-39600830)
chr3 (43-104)||(40982004-40982066)
chr3 (26-102)||(20262426-20262503)
chr3 (43-103)||(37228191-37228252)
chr3 (139-183)||(40982023-40982067)
chr3 (119-171)||(46431770-46431822)
chr3 (119-177)||(27893222-27893280)
chr3 (26-95)||(29475805-29475873)
chr3 (119-182)||(40116559-40116622)
chr3 (191-242)||(43822746-43822797)
chr3 (44-102)||(46146206-46146265)
chr3 (26-103)||(2340812-2340890)
chr3 (139-177)||(31261053-31261091)
chr3 (42-95)||(33755453-33755507)
chr3 (26-103)||(37598265-37598342)
chr3 (119-177)||(50960728-50960786)
chr3 (139-177)||(54365086-54365124)
chr3 (42-98)||(34844684-34844741)
chr3 (209-262)||(37084071-37084124)
chr3 (43-103)||(37228037-37228098)
chr3 (119-176)||(41452831-41452888)
chr3 (119-176)||(43308696-43308753)
chr3 (70-119)||(44395518-44395567)
chr3 (139-176)||(45486963-45487000)
chr3 (148-176)||(34844693-34844721)
chr3 (26-70)||(36820072-36820116)
chr3 (74-110)||(39535533-39535569)
chr3 (26-70)||(41452835-41452879)
chr3 (28-103)||(43308671-43308747)
chr3 (43-102)||(54365087-54365147)
[»] scaffold0325 (2 HSPs)
scaffold0325 (26-103)||(11906-11984)
scaffold0325 (121-182)||(11925-11986)
[»] scaffold0018 (2 HSPs)
scaffold0018 (119-176)||(178511-178568)
scaffold0018 (26-102)||(178515-178592)
[»] scaffold0491 (1 HSPs)
scaffold0491 (42-91)||(3939-3988)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 3775146 - 3775468
Alignment:
Q  10 aatatccatatccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3775146 aatatccatatccagttcattaatccctagacttttcttaatagtttatcttatagtttttctaggtcttcttctgcctctagtgatttgactactatcc 3775245  T
Q  109 atttaatctacaactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttgttgctaacttatccgctatcaactac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3775246 atttaatctacaactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttgttgctaacttatccgctatcaactac 3775345  T
Q  209 aagctagcttatctgctatccgctataagctcattcactatcaactagattatcggttatcagttatttttaatagacaaaacttaaaacaattccaaca 308  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3775346 aagttagcttatctgctatccgctataagctcattcactatcaactagattatcagttatcagttatttttaacagacaaaacttaaaacaattccaaca 3775445  T
Q  309 aaaaggtatgcatttttagcaat 331  Q
    |||||||||||||||||||||||    
T  3775446 aaaaggtatgcatttttagcaat 3775468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 12576955 - 12577025
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    ||||||||| |||||  ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  12576955 tcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttcctctgcctctagtgat 12577025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 27998631 - 27998574
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||    
T  27998631 aactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtcttc 27998574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 14667962 - 14667909
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctagg 172  Q
    ||||||||||||| ||||  |||||||||||| |||||||||||||||||||||    
T  14667962 caactcattaatctctagatctttcttagtagcttctcttatagtttttctagg 14667909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 2066188 - 2066130
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||| |||||||||||| ||||| |||||||||||||||    
T  2066188 caactcattaatctctagatcttttttagtagtttcttttataatttttctaggtcttc 2066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 2713113 - 2713055
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||||||    
T  2713113 ttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttgact 2713055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 2713135 - 2713077
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||| ||| ||||  | |||||| ||||||||||||||||||||||||||||||    
T  2713135 caactcattcatctctagatccttcttaatagtttctcttatagtttttctaggtcttc 2713077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 12576951 - 12577009
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||||||| |||||| |||| ||||||||||||||||||    
T  12576951 caactcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttc 12577009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14749476 - 14749418
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||| ||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||    
T  14749476 ttcttgatagtttctcttatagtttttctaggtcttcctctgcctttagtgatttgact 14749418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 15489604 - 15489658
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatt 96  Q
    |||||||||||||| |||||| |||||| ||||||||| ||||||||||||||||    
T  15489604 tttcttaatagtttctcttattgtttttctaggtcttcctctgcctctagtgatt 15489658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 10082836 - 10082893
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||||| ||||  | || ||| |||||||||||||||||||||||||||||    
T  10082836 caactcattaatctctagatccttgttactagtttctcttatagtttttctaggtctt 10082893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 18698949 - 18698896
Alignment:
Q  58 tcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccat 110  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  18698949 tcttatagtttttctaggtattcctctgcctctagtgatttgactactctccat 18698896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 6859551 - 6859491
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  6859551 tttcctaatagtttctcttatagtttttctaggtcttcctcttcctctagtggtttgacta 6859491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 42199580 - 42199420
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatcta------ 118  Q
    ||||||||  |||||  ||||| |||||||| ||| ||||||||| ||||||||  ||| || ||||||||||||||||| ||||| | |||||          
T  42199580 tcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttgactactctccatgtgatctactctag 42199481  T
Q  119 ---caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
       ||||||||||||  ||||  |||||| | |||||| ||| ||||||||||||||||||    
T  42199480 gtccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctt 42199420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 7359357 - 7359432
Alignment:
Q  28 attaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||| ||||| |||||| |||||||| |||||| |||||| ||||  ||| ||||||||||||||| ||||||    
T  7359357 attaatctctagatttttctaaatagtttctcttatggtttttctaggctttcctctgcctctagtgatatgacta 7359432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 33157947 - 33157982
Alignment:
Q  144 ttagtagtttctcttatagtttttctaggtcttctt 179  Q
    ||||||||||||||||||| ||||||||||||||||    
T  33157947 ttagtagtttctcttataggttttctaggtcttctt 33157982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 28053 - 28015
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  28053 ctttcctaatagtttctcttatagtttttctaggtcttc 28015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 6859552 - 6859514
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  6859552 ctttcctaatagtttctcttatagtttttctaggtcttc 6859514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 9235241 - 9235166
Alignment:
Q  19 atccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    |||||| ||||||||| ||| |  |||||||||||||| |||||  |||||| ||||||||| |||||||||||||||    
T  9235241 atccagctcattaatctctatatctttcttaatagtttctctta--gtttttctaggtcttcctctgcctctagtgat 9235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 14749498 - 14749440
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| |||||| ||||  | |||||  ||||||||||||||||||||||||||||||    
T  14749498 caactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttc 14749440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 15489603 - 15489641
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  15489603 ctttcttaatagtttctcttattgtttttctaggtcttc 15489641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 29922455 - 29922417
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29922455 ctttcttaatagtttctcttatagtttttctagatcttc 29922417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 30588638 - 30588580
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||| ||| ||||  ||||||||  | |||||||||||||||||||||||||||    
T  30588638 caactcattcatctctagatctttcttaacaatttctcttatagtttttctaggtcttc 30588580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 33667626 - 33667568
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  | |||||| ||  ||||||||||||||||||||||||||    
T  33667626 caactcattaatctctagatccttcttaataacttctcttatagtttttctaggtcttc 33667568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 38684671 - 38684613
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| ||||||| ||||  ||||||||  |||||||||| ||||||||||||||||||    
T  38684671 caactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtcttc 38684613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 42199473 - 42199379
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||||||  |||||  ||||| |||||||| ||| ||||||||| ||||||||  ||| || ||||||||||||||||| ||||| | ||||||    
T  42199473 tcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttgactactctccatgtgatctac 42199379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 7678665 - 7678588
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| |||||  ||||| |||||||| |||||| |||||  ||| ||||| ||||||||||||||| ||||||    
T  7678665 tcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcctctgcctctagtgatctgacta 7678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 32516720 - 32516679
Alignment:
Q  48 taatagtttatcttatagttttttaggtcttcttctgcctct 89  Q
    ||||||||| |||||||||||||||||||||| ||| |||||    
T  32516720 taatagtttctcttatagttttttaggtcttcctctacctct 32516679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 1001295 - 1001331
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  1001295 ttcttaatagtttcacttatagtttttctaggtcttc 1001331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 38869068 - 38868975
Alignment:
Q  27 cattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||||| |||||  |||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  38869068 cattaatcgctagatctttcttaataatttctcttatagtttttctaggtcttcttctgcctctaatgatttgactaccctccatctaatctac 38868975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 8203225 - 8203285
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    ||||||||||||| ||||  |||| ||| ||||||||||||||||||||||||||||||||    
T  8203225 caactcattaatctctagatcttttttaatagtttctcttatagtttttctaggtcttctt 8203285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 38869073 - 38869013
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    |||| |||||||||||||  |||||||| || |||||||||||||||||||||||||||||    
T  38869073 caacccattaatcgctagatctttcttaataatttctcttatagtttttctaggtcttctt 38869013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 853898 - 853957
Alignment:
Q  44 ttcttaatagtttatcttatag-ttttttaggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||    
T  853898 ttcttaatagtttctcgtatagattttttaggtcttcctctgcctctagtgatttgacta 853957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 19969303 - 19969362
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    ||||||||||||| ||||  |||| ||| |||||||||||||||||||||||||||||||    
T  19969303 caactcattaatctctagatctttgttaatagtttctcttatagtttttctaggtcttct 19969362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 6025792 - 6025714
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||||  ||| ||| |||| | ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  6025792 tcattaatctctagatcttttttactagtatctcttatagtttttctaggtcttcctctgcctctagtgatttgactac 6025714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 29577230 - 29577307
Alignment:
Q  19 atccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    |||||| ||||||||| |||||  |||||||||||||||| || |||||||| ||||||||| ||| |||||||||||    
T  29577230 atccagctcattaatctctagatctttcttaatagtttatgttgtagtttttctaggtcttcctctacctctagtgat 29577307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 40416562 - 40416502
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    |||||||||||||  |||  |||||||| |||||| |||||||||||||||||||||||||    
T  40416562 caactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtcttctt 40416502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 49377475 - 49377416
Alignment:
Q  62 atagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctaca 120  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||| | |||||||    
T  49377475 atagtttttctaggtcttcctctgcctctagtgatttgactactctccatctgatctaca 49377416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 3818947 - 3819005
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||   |||||||| ||||||||||||||||||||| ||||||||    
T  3818947 caactcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtcttc 3819005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 6025796 - 6025738
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||| ||| |||| |||||||||||||||||||||||||    
T  6025796 caactcattaatctctagatcttttttactagtatctcttatagtttttctaggtcttc 6025738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 7083081 - 7083023
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||| |  ||||| ||||||||||||||| ||||||||||||||    
T  7083081 caactcattaatctctagttccatcttaatagtttctcttatagcttttctaggtcttc 7083023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 8342972 - 8343030
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||| ||| | ||||||||||||||||||||||||||||    
T  8342972 caactcattaatctctagatctttattaattgtttctcttatagtttttctaggtcttc 8343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 30834068 - 30834126
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  ||||| || ||||||||||||||| ||||||||||||||    
T  30834068 caactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttc 30834126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 43423902 - 43423812
Alignment:
Q  30 taatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||| |||||  ||||||||| || | |||| || ||||| ||||||||| ||| |||||||||||||||||||||||||| || |||||    
T  43423902 taatctctagatctttcttaatggtctctcttgtaatttttctaggtcttcctctacctctagtgatttgactactatccatctagtctac 43423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 8796396 - 8796319
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||  |||||  |||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||| ||||||    
T  8796396 tcattaatatctagatctttcttaatagtttctcttaaagtttttattggtcttcctctgcctctagtgatctgacta 8796319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 40416558 - 40416481
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||||  ||||  |||||||||||||| ||||||||||||| |||||||||||||| || | ||||| ||||||    
T  40416558 tcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtcttcttctgtctttggtgatctgacta 40416481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 51584912 - 51584855
Alignment:
Q  45 tcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    |||||||||||| ||||||||||||| |||||||||  || |||||||||||||||||    
T  51584912 tcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatttgact 51584855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 10272427 - 10272360
Alignment:
Q  44 ttcttaatagtttatcttata-gttttttaggtcttcttctgcctctagtgatttgactactatccat 110  Q
    ||||||||||||| ||||||| ||||| |||||||||  || ||||||||||||||||| | ||||||    
T  10272427 ttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgatttgactcccatccat 10272360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 12261826 - 12261861
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtctt 176  Q
    |||||| |||||||||||||||||||||||||||||    
T  12261826 ttcttactagtttctcttatagtttttctaggtctt 12261861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 44008779 - 44008672
Alignment:
Q  13 atccatatccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatt 111  Q
    |||| ||||||  ||||| ||| |||||  |||||  ||||||| ||||| | ||||| ||||||||| |||||||||||||||||||||||   | |||    
T  44008779 atccctatccaactcattgatctctagatctttctcgatagtttctcttagattttttctaggtcttcctctgcctctagtgatttgactacccgctatt 44008680  T
Q  112 taatctac 119  Q
    ||||||||    
T  44008679 taatctac 44008672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 51584912 - 51584877
Alignment:
Q  142 tcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| ||||||||||||||||||||||||||||||    
T  51584912 tcttaatagtttctcttatagtttttctaggtcttc 51584877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 8203229 - 8203287
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttct 83  Q
    ||||||||| |||||  ||| |||||||||| ||||||||||||| |||||||||||||    
T  8203229 tcattaatctctagatcttttttaatagtttctcttatagtttttctaggtcttcttct 8203287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 28528546 - 28528488
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  | |||||| |||||||| ||||||||||| |||||||||    
T  28528546 caactcattaatctctagatccttcttaatagtttctgttatagtttttttaggtcttc 28528488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 30834072 - 30834150
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||||  |||| ||||||||| |||||||| |||| ||||||||| ||| ||||||  |||||||||||    
T  30834072 tcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcctctccctctatcgatttgactac 30834150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 33560973 - 33561031
Alignment:
Q  46 cttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||||  |||| ||||||| |||| |||| |||||||||||||||||||||||    
T  33560973 cttaatagtttcccttacagtttttctaggacttcctctgcctctagtgatttgactac 33561031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 42501295 - 42501217
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||  ||||  |||||||||| ||| ||||||||||||| ||||| ||| ||| |||||| ||||||||||||    
T  42501295 tcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctctacctctaatgatttgactac 42501217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 42501299 - 42501245
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggt 173  Q
    |||||||||||||  |||  |||||||| || |||||||||||||||||||||||    
T  42501299 caactcattaatctatagatctttcttaataatttctcttatagtttttctaggt 42501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 50771647 - 50771705
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| ||||||| ||||  | |||||| ||||||| ||||||||||||||||||||||    
T  50771647 caacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggtcttc 50771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 52073188 - 52073226
Alignment:
Q  66 ttttttaggtcttcttctgcctctagtgatttgactact 104  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  52073188 ttttctaggtcttcctctgcctctagtgatttgactact 52073226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 8342976 - 8343049
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttg 98  Q
    ||||||||| |||||  ||| ||||| |||| ||||||||||||| ||||||||| |||  |||||||||||||    
T  8342976 tcattaatctctagatctttattaattgtttctcttatagtttttctaggtcttcctctatctctagtgatttg 8343049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 17815669 - 17815612
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||| |||| ||||  |||||| | |||||||||||||| |||||||||||||||    
T  17815669 aactcatcaatcactagatctttctaaatagtttctcttataatttttctaggtcttc 17815612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 179
Target Start/End: Complemental strand, 29808016 - 29807987
Alignment:
Q  150 gtttctcttatagtttttctaggtcttctt 179  Q
    ||||||||||||||||||||||||||||||    
T  29808016 gtttctcttatagtttttctaggtcttctt 29807987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 32404618 - 32404675
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||| |||   ||||| || |||||||||||||||||||| |||||||||    
T  32404618 aactcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtcttc 32404675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 32404621 - 32404698
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| ||| |  |||| ||||||||| ||||||||||||| ||||||||| ||| ||||| ||||| ||||||    
T  32404621 tcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatgacta 32404698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 34827224 - 34827253
Alignment:
Q  148 tagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||||||||||||||||||    
T  34827224 tagtttctcttatagtttttctaggtcttc 34827253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 50806838 - 50806762
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||| ||||||| |||||| |||||| ||||||||| ||| | ||||||||||||||| |  ||||||| ||||||    
T  50806838 ttcttgatagtttctcttattgtttttctaggtcttcatctacttctagtgatttgactcccctccatttgatctac 50806762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 51812679 - 51812627
Alignment:
Q  43 tttcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgat 95  Q
    |||||||| ||||| |||||| |||||||||||||   |||||||||||||||    
T  51812679 tttcttaaaagtttctcttatggttttttaggtctatgtctgcctctagtgat 51812627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 8459133 - 8459209
Alignment:
Q  29 ttaatccctagacttttcttaatagtttatcttatag-ttttttaggtcttcttctgcctctagtgatttgactact 104  Q
    |||||| ||||| |||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||    
T  8459133 ttaatctctagatttttcttaatagtttatcttttagtttttttaggtcttcctctgcctttagtgatttgactact 8459209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 44667343 - 44667434
Alignment:
Q  29 ttaatccctagacttttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||| ||||| ||||||| ||||||| |  ||||||||||  ||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  44667343 ttaatctctagatttttcttgatagtttctaatatagtttttcgaggtcttcttctgcctctagtgatttgactactatacatctgatctac 44667434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 7682005 - 7682099
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||||||  |||| ||||||| ||||||| |||||||||||||  |||||||| ||||||||||||||| |||||||  ||||| ||||||||    
T  7682005 tcattaatctatagatttttcttgatagtttctcttatagtttttccaggtcttcctctgcctctagtgatgtgactaccctccatctaatctac 7682099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 38903830 - 38903890
Alignment:
Q  43 tttcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||  ||||||||||    
T  38903830 tttcttaatagtttctcttatagttttctaggtcttcatctgcctctagccatttgactac 38903890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 49987578 - 49987518
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||    
T  49987578 tttcttaatagtttctcttatagtttttctaggtcttcctctgcctctagtgaattgacta 49987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 44686668 - 44686759
Alignment:
Q  29 ttaatccctagacttttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||| ||||| ||||||| ||||||| |  ||||||||||  |||||||||||||||||||||||||| |||||||| ||| | ||||||    
T  44686668 ttaatctctagatttttcttgatagtttctaatatagtttttcgaggtcttcttctgcctctagtgatttaactactatacatctgatctac 44686759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 53540460 - 53540401
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  53540460 tttcctaatagtttatcttatagtttttctaggtcttcctctgcctctagtgatctgact 53540401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 54470394 - 54470307
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccattt 112  Q
    ||||||||| |||||  ||| ||||||| || ||||||||||||| | ||||||||| |||||||||| ||||||||||| |||||||    
T  54470394 tcattaatctctagaactttattaatagattctcttatagtttttcttggtcttcttttgcctctagtaatttgactactctccattt 54470307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 18966775 - 18966721
Alignment:
Q  43 tttcttaatagtttatcttatagtt-ttttaggtcttcttctgcctctagtgatt 96  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  18966775 tttcttaatagtttctcttatagttgttttaggtcttcttctacctctagtgatt 18966721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 47147560 - 47147475
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccat 110  Q
    ||||||||| |||||  |||||||||||||| |  |||||||||| ||||||||| |||||||||||||||  ||||||| |||||    
T  47147560 tcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttcctctgcctctagtgatccgactactctccat 47147475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 10209227 - 10209171
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||||||| ||||  | |||||| ||||||||||||||||||||||||||||    
T  10209227 caactcattaatctctagatccttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 48033255 - 48033195
Alignment:
Q  43 tttcttaatagtttatcttatagtttt-ttaggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||||    
T  48033255 tttcttaatagtttctcttatagttttcttaagtcttcctctgcctctagtgatttaacta 48033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 934526 - 934605
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgatttgactacta 105  Q
    ||||||||| |||||  |||||||||||||| ||| |||||||||   |||||| ||||||||||||| |||| ||||||    
T  934526 tcattaatctctagaactttcttaatagtttctctaatagtttttctagtcttcctctgcctctagtgttttgcctacta 934605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 8599052 - 8599091
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  8599052 ctttcttaatagtttctcttatagtttttctaggtcttct 8599091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 42293360 - 42293439
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatag-ttttttaggtcttcttctgcctctagtgatttgactact 104  Q
    ||||||||  |||||  |||||||||||||| |||||||| |||||||| || || | ||||||||||||||||||||||    
T  42293360 tcattaatttctagatctttcttaatagtttctcttatagtttttttagttcatcctttgcctctagtgatttgactact 42293439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 45569104 - 45569175
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagt-tttttaggtcttcttctgcctctagtgatt 96  Q
    ||||| ||| ||||| ||||||||||||||| ||||||| | ||| ||||||||| ||||||||||||||||    
T  45569104 tcattgatctctagatttttcttaatagtttctcttataatgtttctaggtcttcctctgcctctagtgatt 45569175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 54470398 - 54470335
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttg 182  Q
    ||||||||||||| ||||  |||| ||| ||| |||||||||||||||||| ||||||||||||    
T  54470398 caactcattaatctctagaactttattaatagattctcttatagtttttcttggtcttcttttg 54470335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 47147564 - 47147506
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||||||| ||||||||  ||||||||||||||||||||    
T  47147564 caactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttc 47147506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 49987579 - 49987541
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  49987579 ctttcttaatagtttctcttatagtttttctaggtcttc 49987541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 16191595 - 16191644
Alignment:
Q  46 cttaatagtttatcttatagttttttaggtcttcttctgcctctagtgat 95  Q
    |||||||||||||| | ||||||||||||||||||| |||||||| ||||    
T  16191595 cttaatagtttatcgtgtagttttttaggtcttcttttgcctctaatgat 16191644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 40018269 - 40018362
Alignment:
Q  11 atatccatatccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||| ||||||  ||||| ||| |||||  |||||||| ||||| ||||||||||||| || |||||  | |||||||||||||||||||||    
T  40018269 atatccctatccaactcattgatctctagatctttcttaacagtttttcttatagtttttctaagtctttatttgcctctagtgatttgactac 40018362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 40268368 - 40268433
Alignment:
Q  36 ctagacttttcttaatagtttatcttatagttttttaggtcttcttctg-cctctagtgatttgac 100  Q
    ||||| ||||||||||||||| |||||||||||| |||| |||| |||| || |||||||||||||    
T  40268368 ctagatttttcttaatagtttctcttatagttttctaggccttcctctgccccctagtgatttgac 40268433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 934522 - 934574
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctag 171  Q
    ||||||||||||| ||||  |||||||| |||||||||| |||||||||||||    
T  934522 caactcattaatctctagaactttcttaatagtttctctaatagtttttctag 934574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 31961357 - 31961413
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||| ||| ||||  ||||| || ||||||||||||||||||||||||||||    
T  31961357 caactcatttatctctagatctttcctaatagtttctcttatagtttttctaggtct 31961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 37488262 - 37488226
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtct 175  Q
    |||||||| ||||||||||||||||||||||||||||    
T  37488262 ctttcttaatagtttctcttatagtttttctaggtct 37488226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 42639111 - 42639163
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctag 171  Q
    ||||||||||||||||||  |||||||| |||||||||||  |||||||||||    
T  42639111 caactcattaatcgctagatctttcttaatagtttctcttgcagtttttctag 42639163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 50680931 - 50680875
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||||||| ||||  |||||| | || |||||||||||||||||||||||||    
T  50680931 caactcattaatctctagatctttctaaataatttctcttatagtttttctaggtct 50680875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 21214677 - 21214728
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttcta 170  Q
    |||||||||| ||  ||| ||||||||| |||||||||||||||||||||||    
T  21214677 caactcattactctatagacctttcttaatagtttctcttatagtttttcta 21214728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 31961361 - 31961452
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatc 116  Q
    ||||| ||| |||||  |||| ||||||||| ||||||||||||| ||||||| |  || ||||||||||||||||| || ||||| |||||    
T  31961361 tcatttatctctagatctttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatttgactcctctccatctaatc 31961452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 13805377 - 13805435
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgac 100  Q
    |||||| ||||||| ||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  13805377 tttcttcatagtttctcttatagtttttctaggttttcctctgcctctagtgatctgac 13805435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 20999191 - 20999133
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||| | ||||  |||||||| |||||| | |||||||||||||||||||||    
T  20999191 caactcattaaactctagatctttcttaatagtttatattatagtttttctaggtcttc 20999133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 21107163 - 21107125
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  21107163 ctttcctaatagtttctcttatagtttttctaggtcttc 21107125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 26356810 - 26356752
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  | ||| ||  |||||||||||||||||||||||||||||    
T  26356810 caactcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttc 26356752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 30853530 - 30853452
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||  |||| ||||| ||||||||| ||||||||||||| || |||| | | ||||||| |||||||||||||    
T  30853530 tcattaatctttagatttttcataatagtttctcttatagtttttctaagtctccctttgcctcttgtgatttgactac 30853452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 43069930 - 43069992
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactact 104  Q
    ||||| |||||||| | | ||||||||| || ||||||||||||||||||| |||||||||||    
T  43069930 tttctcaatagtttctttcatagtttttgtaagtcttcttctgcctctagtaatttgactact 43069992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 44641901 - 44641995
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||||||  ||||| ||||||| || |||| |  ||||||||||  | ||||||||||| || |||||||||||||||| ||||||| ||||||    
T  44641901 tcattaatgtctagatttttcttgattgtttctaatatagtttttcgaagtcttcttctgtctttagtgatttgactactctccatttgatctac 44641995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 45204950 - 45204988
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  45204950 ctttcctaatagtttctcttatagtttttctaggtcttc 45204988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 28351730 - 28351693
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||| || |||||||||||||||||||||||||||||    
T  28351730 ctttcgtaatagtttctcttatagtttttctaggtctt 28351693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 35555761 - 35555794
Alignment:
Q  142 tcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||| ||||||||||||||||||||||||||||    
T  35555761 tcttaatagtttctcttatagtttttctaggtct 35555794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 35690433 - 35690404
Alignment:
Q  148 tagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||||||||||||||||||    
T  35690433 tagtttctcttatagtttttctaggtcttc 35690404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 38903810 - 38903866
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||  |||  |||||||| ||||||||||||||| ||||||||||||||    
T  38903810 aactcattaatctttaggtctttcttaatagtttctcttatag-ttttctaggtcttc 38903866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 40933004 - 40933091
Alignment:
Q  11 atatccatatccagttcattaatccctagacttttcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgatttgactact 104  Q
    |||||| ||||||  ||||||||| ||||||    ||||||||||| ||||   ||||| ||||||||| ||||||||| ||||||||||||||    
T  40933004 atatccctatccaactcattaatctctagacc---cttaatagtttttctt---gttttctaggtcttcctctgcctctggtgatttgactact 40933091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 55579196 - 55579143
Alignment:
Q  49 aatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    |||||||||| ||||||||||| ||||||||||||| |||||  ||||||||||    
T  55579196 aatagtttattttatagtttttctaggtcttcttctacctcttttgatttgact 55579143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 18966776 - 18966736
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  18966776 ctttcttaatagtttctcttatagttgttttaggtcttctt 18966736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 20999187 - 20999115
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgattt 97  Q
    ||||||| | |||||  |||||||||||||||| ||||||||||| ||||||||| ||||  |||| ||||||    
T  20999187 tcattaaactctagatctttcttaatagtttatattatagtttttctaggtcttcctctgtttctaatgattt 20999115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 26356806 - 26356730
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||| |||||   ||| ||| ||||| ||||||||||||| |||||||||  || |||||||||||||||||    
T  26356806 tcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttcccctacctctagtgatttgact 26356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 29398964 - 29398928
Alignment:
Q  66 ttttttaggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  29398964 ttttctaggtcttcctctgcctctagtgatttgacta 29398928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 31897519 - 31897575
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||| ||| ||||  | ||| || ||||||||||||||||||||||||||||    
T  31897519 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtct 31897575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 42639115 - 42639191
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||| |||||  |||||||||||||| ||||  ||||||| ||| | ||| ||| |||||||||||||||||    
T  42639115 tcattaatcgctagatctttcttaatagtttctcttgcagtttttctagatattcctctacctctagtgatttgact 42639191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 46372215 - 46372159
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||| ||| ||||  | ||| || ||||||||||||||||||||||||||||    
T  46372215 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtct 46372159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 55809111 - 55809139
Alignment:
Q  149 agtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||||||||||||||||||||    
T  55809111 agtttctcttatagtttttctaggtcttc 55809139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 23023416 - 23023358
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||    
T  23023416 caactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtcttc 23023358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 39967590 - 39967643
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctagg 172  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  39967590 caactcattaatcgctagatctttcttaatagtttctcttatagtttttctagg 39967643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 45512607 - 45512667
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  45512607 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgacta 45512667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 79222 - 79136
Alignment:
Q  18 tatccagttcattaatccctagacttttcttaatagtttatcttatagt-tttttaggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||| ||||||||| |||||  |||||||||||||| ||||||||| ||| || | |||| ||||| |||||||||||||||||    
T  79222 tatccagctcattaatctctagatctttcttaatagtttctcttatagtgtttctaagccttcctctgcttctagtgatttgactac 79136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 4011274 - 4011216
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||||  |||  |||||||| ||||||||||||||||||||||||||||||    
T  4011274 caactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtcttc 4011216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 35643697 - 35643755
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||||||| || |||||||||||||||||||||||||||    
T  35643697 caactcattaatctctagatctttcttaataatttctcttatagtttttctaggtcttc 35643755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 35643701 - 35643778
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| |||||  |||||||||| ||| ||||||||||||| ||||||||| |||||||||||| || ||||||    
T  35643701 tcattaatctctagatctttcttaataatttctcttatagtttttctaggtcttcctctgcctctagtaatctgacta 35643778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 10080002 - 10080078
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttt-tttaggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||| |||||  |||||||| ||||| ||||||||||| | ||||||||| ||| |||||||||||||||||    
T  10080002 tcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttgact 10080078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 37826459 - 37826399
Alignment:
Q  45 tcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactact 104  Q
    |||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||    
T  37826459 tcttaatagtttctcttatagtttatctaggtctccctctgcctctagtgatttgactact 37826399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 16351569 - 16351510
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    ||||||||||||| ||||  | |||||| |||||||||| ||||||||||||||||||||    
T  16351569 caactcattaatctctagatccttcttaatagtttctctaatagtttttctaggtcttct 16351510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 4011270 - 4011192
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||  ||||  |||||||||||||| ||||||||||||| ||||||||| |||| |||||| ||||| |||||    
T  4011270 tcattaatctttagatctttcttaatagtttctcttatagtttttctaggtcttcctctgtctctagcgatttaactac 4011192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 38178351 - 38178409
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||  ||||  |||| ||| ||||||||||||||||||||||||||||||    
T  38178351 caactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtcttc 38178409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 41444450 - 41444506
Alignment:
Q  41 cttttcttaatagtttatcttatagttttt---taggtcttcttctgcctctagtga 94  Q
    |||||||||||||||| |||||||||||||   ||||||||| ||||||||||||||    
T  41444450 cttttcttaatagtttctcttatagtttttttctaggtcttcctctgcctctagtga 41444506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 18737249 - 18737298
Alignment:
Q  42 ttttcttaatagtttatcttatagttttttaggtcttcttctgcctctag 91  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  18737249 ttttctaaatagtttctcttatagttttttaggtctacctctgcctctag 18737298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 18742134 - 18742183
Alignment:
Q  42 ttttcttaatagtttatcttatagttttttaggtcttcttctgcctctag 91  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  18742134 ttttctaaatagtttctcttatagttttttaggtctacctctgcctctag 18742183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 18747098 - 18747147
Alignment:
Q  42 ttttcttaatagtttatcttatagttttttaggtcttcttctgcctctag 91  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  18747098 ttttctaaatagtttctcttatagttttttaggtctacctctgcctctag 18747147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 10109003 - 10108947
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||| |||||| ||||  |||||||| ||||||||||||| |||||||||||||||    
T  10109003 aactcgttaatctctagatctttcttattagtttctcttatggtttttctaggtctt 10108947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 32931131 - 32931071
Alignment:
Q  43 tttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||    
T  32931131 tttcctaatagtttctctgatagtttttttaggtcttcctctgcctctagtgatatgacta 32931071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 38178376 - 38178432
Alignment:
Q  47 ttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||    
T  38178376 ttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttgacta 38178432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 3079699 - 3079770
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgattt 97  Q
    |||| |||||| |||  |||||||||||||| |||||||||| | ||||||||| | | |||||||||||||    
T  3079699 tcatcaatccccagatctttcttaatagtttctcttatagttatctaggtcttcctttacctctagtgattt 3079770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 45419407 - 45419368
Alignment:
Q  138 cctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  45419407 cctttcctaatagtttctcttatagtttttctaggtcttc 45419368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 5908817 - 5908779
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  5908817 cttttttaatagtttctcttatagtttttctaggtcttc 5908779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 10079998 - 10080056
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  ||||||||  ||||| ||||||||||| |||||||||||    
T  10079998 caactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttc 10080056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 17491765 - 17491803
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  17491765 ctttcttaatagtttctcttacagtttttctaggtcttc 17491803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 23492225 - 23492168
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||||||||   |||||| |||||||||||| |||| ||||||||||||||    
T  23492225 caactcattaatcgctacatctttctgagtagtttctctaatag-ttttctaggtcttc 23492168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 45512606 - 45512644
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  45512606 ctttcctaatagtttctcttatagtttttctaggtcttc 45512644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 5127381 - 5127414
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctagg 172  Q
    |||||||| |||||||||||||||||||||||||    
T  5127381 ctttcttaatagtttctcttatagtttttctagg 5127414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 5127382 - 5127435
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    |||||||||||||| ||||||||||||| |||| || | |||||||||||||||    
T  5127382 tttcttaatagtttctcttatagtttttctaggcctacctctgcctctagtgat 5127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 29709859 - 29709830
Alignment:
Q  148 tagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||||||||||||||||||    
T  29709859 tagtttctcttatagtttttctaggtcttc 29709830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 30783137 - 30783214
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| |||||  ||||| |||||||| |||||| |||||  ||| ||||| ||||||||||||||| ||||||    
T  30783137 tcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcctctgcctctagtgatctgacta 30783214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 79215 - 79167
Alignment:
Q  122 ctcattaatcgctagtcctttcttagtagtttctcttatagtttttcta 170  Q
    |||||||||| ||||  |||||||| |||||||||||||||| ||||||    
T  79215 ctcattaatctctagatctttcttaatagtttctcttatagtgtttcta 79167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 16994557 - 16994593
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  16994557 ttcttaatagtttctcatatagtttttctaggtcttc 16994593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 38391986 - 38392042
Alignment:
Q  121 actcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||  |||  |||||||| | ||||||| ||||||||||||||||||||    
T  38391986 actcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtcttc 38392042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 39388974 - 39388918
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctc-ttatagtttttctaggtc 174  Q
    ||||||||||||| ||||  ||||| || ||||||||| ||||||||||||||||||    
T  39388974 caactcattaatctctagatctttcctaatagtttctctttatagtttttctaggtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 39967594 - 39967638
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt 70  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||    
T  39967594 tcattaatcgctagatctttcttaatagtttctcttatagttttt 39967638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 24549783 - 24549857
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtt-ttttaggtcttcttctgcctctagtgatttga 99  Q
    ||||||||| |||||  |||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||    
T  24549783 tcattaatctctagatctttcttaatagtttctcttatagttctttcaggtcttcttctacctctagtgatttga 24549857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 45601667 - 45601609
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  |||||||| | ||||||||||||||||||||||||||||    
T  45601667 caactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtcttc 45601609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 30814783 - 30814843
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||| ||||||    
T  30814783 tttcttaatagtttctcttatagtgtttctaggtcttcctctgcctctagtgatctgacta 30814843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 29653638 - 29653697
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    |||||||||||| ||||  |||||||| |||||||||||| ||||||||| |||||||||    
T  29653638 aactcattaatctctagatctttcttaatagtttctcttacagtttttcttggtcttctt 29653697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 14593929 - 14593871
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||||||| ||||||||||||| |||||||||  || |||||||||||||||||    
T  14593929 ttcttaatagtttctcttatagtttttctaggtcttcccctacctctagtgatttgact 14593871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 28628024 - 28628082
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||   ||||| || ||||||||||||||||||||||||||||||    
T  28628024 caactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttc 28628082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 30144977 - 30144887
Alignment:
Q  11 atatccatatccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgac 100  Q
    |||||| ||||||  ||||||||| |||||  |||||||||||||| ||  ||||||||| |||||||| || || |||||||||||||||    
T  30144977 atatccctatccaactcattaatctctagatctttcttaatagtttctcgaatagtttttataggtcttattttgtctctagtgatttgac 30144887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 1569207 - 1569154
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctagg 172  Q
    ||||||||||||| ||||  |||||||| ||||| |||||||||||||||||||    
T  1569207 caactcattaatctctagatctttcttaatagttactcttatagtttttctagg 1569154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 12966186 - 12966149
Alignment:
Q  140 tttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12966186 tttcttaatagtttctcttatagtttttctaggtcttc 12966149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 28628028 - 28628105
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| ||| |  |||| ||||||||| ||||||||||||| ||||||||| ||| ||||| ||||||||||||    
T  28628028 tcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgacta 28628105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 29653641 - 29653718
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| |||||  |||||||||||||| ||||| ||||||| | |||||||||||| |||||  ||||||||||    
T  29653641 tcattaatctctagatctttcttaatagtttctcttacagtttttcttggtcttcttctgtctctaacgatttgacta 29653718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 40830371 - 40830310
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactact 104  Q
    ||||||||||||| |||||||| |||| ||||||||| |||| |||||||||||| ||||||    
T  40830371 ttcttaatagtttctcttatagattttctaggtcttcctctgtctctagtgatttcactact 40830310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 41461286 - 41461204
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttttagg----tcttcttctgcctctagtgatttgactact 104  Q
    ||||||||| |||||  ||| |||||||||| |||||||||||||| ||    || || ||||||||||||||||||||||||    
T  41461286 tcattaatcactagatctttattaatagtttctcttatagtttttttgggtcgtcctcctctgcctctagtgatttgactact 41461204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 14593929 - 14593893
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14593929 ttcttaatagtttctcttatagtttttctaggtcttc 14593893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 16013452 - 16013416
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16013452 ttcttaatagtttctcttatagtttttctaggtcttc 16013416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 24549779 - 24549839
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    ||||||||||||| ||||  |||||||| ||||||||||||||||| ||  ||||||||||    
T  24549779 caactcattaatctctagatctttcttaatagtttctcttatagttctttcaggtcttctt 24549839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 30144966 - 30144902
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttgt 183  Q
    ||||||||||||| ||||  |||||||| |||||||||  ||||||||| |||||||| ||||||    
T  30144966 caactcattaatctctagatctttcttaatagtttctcgaatagtttttataggtcttattttgt 30144902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 40830395 - 40830335
Alignment:
Q  117 tacaactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||  ||||  | |||||| ||||||||||||||| ||||||||||||||    
T  40830395 tacaactcattaatttctagatccttcttaatagtttctcttatagattttctaggtcttc 40830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 37976426 - 37976367
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    ||||||||||||| |||   ||||| || ||||||| |||||||||||||||||||||||    
T  37976426 caactcattaatctctaaatctttcatattagtttcacttatagtttttctaggtcttct 37976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 16013452 - 16013394
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||||||| ||||||||||||| |||||||||  || ||||| |||||||||||    
T  16013452 ttcttaatagtttctcttatagtttttctaggtcttcccctacctctggtgatttgact 16013394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 30814782 - 30814820
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  30814782 ctttcttaatagtttctcttatagtgtttctaggtcttc 30814820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 38135304 - 38135362
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||   |||| ||| |||||||||||||| |||||||||||||||    
T  38135304 caactcattaatctctaaatcttttttaatagtttctcttatactttttctaggtcttc 38135362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 45601663 - 45601597
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctag 91  Q
    ||||||||| |||||  ||||||||| |||| ||||||||||||| ||||||||| ||| |||||||    
T  45601663 tcattaatctctagatctttcttaatggtttctcttatagtttttctaggtcttcctctacctctag 45601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 6420605 - 6420662
Alignment:
Q  46 cttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| | ||||||||||||| ||||||| | ||||||||||||||| ||||||    
T  6420605 cttaatagtatctcttatagtttttataggtctacctctgcctctagtgatctgacta 6420662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 21517500 - 21517529
Alignment:
Q  148 tagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||||||||||||||||||    
T  21517500 tagtttctcttatagtttttctaggtcttc 21517529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 28858236 - 28858179
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||| ||||||| ||||  |||||||| |||||| |||||||||||||||| |||||    
T  28858236 caacttattaatctctagatctttcttaatagtttgtcttatagtttttctaagtctt 28858179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 30664759 - 30664702
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||||| ||||  |||||||| |||||||| ||||||| ||||||| ||||    
T  30664759 caactcattaatctctagatctttcttaatagtttcttttatagtctttctagatctt 30664702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 36136926 - 36136897
Alignment:
Q  148 tagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||||||||||||||||||||    
T  36136926 tagtttctcttatagtttttctaggtcttc 36136897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 36245524 - 36245577
Alignment:
Q  51 tagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||| ||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  36245524 tagtttctcttatagtttttataggtcttcctctgtctctagtgatgtgactac 36245577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 19119538 - 19119594
Alignment:
Q  45 tcttaatagtttatcttatagttttttaggtcttcttctgcctctagtgatttgact 101  Q
    |||| ||||||| ||| |||||||| |||||||||  || |||||||||||||||||    
T  19119538 tcttgatagtttctctaatagttttctaggtcttccactacctctagtgatttgact 19119594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 41461290 - 41461242
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagttttt 167  Q
    ||||||||||||| ||||  |||| ||| ||||||||||||||||||||    
T  41461290 caactcattaatcactagatctttattaatagtttctcttatagttttt 41461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 33997639 - 33997717
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtttt-ttaggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||   |||||||| ||||||||||||| |||||||||    
T  33997639 tcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtcttcctctgcctctagtgttttgactac 33997717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 10617329 - 10617405
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||| |||||   |||||||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  10617329 tcattaatctctagatccttcttaatggtttctcttatagtttttctaggttttcttctacctctagtgatttgact 10617405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 31818722 - 31818663
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    ||||||||||||| | |  |||||| || |||||||||||||||||||||||||||||||    
T  31818722 caactcattaatctccaaacctttcctaatagtttctcttatagtttttctaggtcttct 31818663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 34596 - 34654
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||||  |||  |||||||| | ||||||||||||||||||||||||||||    
T  34596 caactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtcttc 34654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 34600 - 34670
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    |||||||||  ||||  ||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||    
T  34600 tcattaatctttagatctttcttaatggtttctcttatagtttttctaggtcttcctctgcctctagtgat 34670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 8364726 - 8364668
Alignment:
Q  43 tttcttaatagtttatcttatagtt-ttttaggtcttcttctgcctctagtgatttgac 100  Q
    |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||| ||||    
T  8364726 tttcttaatagtttctcttatagtttttttaggtcttcatcttcctctagtgatctgac 8364668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 33997635 - 33997693
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||| | ||||||| ||||||||||||||||||| | ||||||||    
T  33997635 caactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtcttc 33997693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 10617325 - 10617385
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttctt 179  Q
    ||||||||||||| ||||  | |||||| | |||||||||||||||||||||||| |||||    
T  10617325 caactcattaatctctagatccttcttaatggtttctcttatagtttttctaggttttctt 10617385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 1747732 - 1747790
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  | ||||||  |||||||||||| ||||||||||||||||    
T  1747732 caactcattaatctctagatccttcttaccagtttctcttatggtttttctaggtcttc 1747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 8364727 - 8364689
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  8364727 ctttcttaatagtttctcttatagtttttttaggtcttc 8364689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 9593799 - 9593857
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||   ||||| || |||||||||||||| |||||||||||||||    
T  9593799 caactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttc 9593857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 21870178 - 21870254
Alignment:
Q  46 cttaatagtttatcttatagtttttt---aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||||||||| ||  ||||||||||   |||||||| ||||||| |||||||||||||||| ||||| | ||||||    
T  21870178 cttaatagtttctcagatagtttttttctaggtcttcctctgcctttagtgatttgactactctccatcttatctac 21870254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 579588 - 579535
Alignment:
Q  43 tttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgat 95  Q
    |||||||||||||| ||||| |||||||| |||||||  |||||||||||||||    
T  579588 tttcttaatagtttctcttacagttttttgaggtctttctctgcctctagtgat 579535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 31831950 - 31832003
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctagg 172  Q
    ||||||| ||||| ||||  |||||||| |||||||||| ||||||||||||||    
T  31831950 caactcagtaatctctagatctttcttaatagtttctctgatagtttttctagg 31832003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 12134013 - 12134073
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||| ||||| ||||||||||| ||||||||| | ||||||||||||| ||||||    
T  12134013 tttcctaatattttatattatagtttttgtaggtcttcctatgcctctagtgatctgacta 12134073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 26784435 - 26784513
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| ||| |  |||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||    
T  26784435 tcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttgactac 26784513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 43832300 - 43832191
Alignment:
Q  11 atatccatatccagttcattaatccctagacttttcttaatagtttatcttatagttt-tttaggtcttcttctgcctctagtgatttgactactatcca 109  Q
    |||||| ||||||  ||||||||| |||||   ||||||||||||| ||||||||||| ||||||||||| ||||| |||| |||||||| |||| ||||    
T  43832300 atatccttatccaactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttcctctgcgtctactgatttgattactctcca 43832201  T
Q  110 tttaatctac 119  Q
    | | ||||||    
T  43832200 tctgatctac 43832191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 9556464 - 9556541
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||  |||||||| | ||||||||||  ||||||||    
T  9556464 tcattaatcactagatctttcttaatagtttatcttatagtttttcaaggtcttcctttgcctctagtagtttgacta 9556541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 26784431 - 26784488
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||||| |||   |||||||| |||||||||||||||||||||||||||||    
T  26784431 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctt 26784488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 29548749 - 29548826
Alignment:
Q  43 tttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||||||| ||| |||||||||||||| |||||||| ||||| ||| |||||||||||||  ||||||| ||||||    
T  29548749 tttcttaataatttctcttatagttttttcaggtcttcctctgcttctcgtgatttgactaccctccatttgatctac 29548826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 33287611 - 33287554
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||||||  ||||  |||||||| ||||||||||||||||||||||||||||||    
T  33287611 aactcattaatttctagatctttcttaatagtttctcttatagtttttctaggtcttc 33287554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 19235079 - 19235155
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    ||||||||| |||||  ||||| |||||||| ||||||||||||| ||||||||| |||  ||||||||||||||||    
T  19235079 tcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgatttgact 19235155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 38435138 - 38435062
Alignment:
Q  27 cattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||||||| |||||  |||||||||||||| |||| |||||||| ||||||| | ||||||||||||||| ||||||    
T  38435138 cattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctgacta 38435062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 9556460 - 9556523
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttg 182  Q
    ||||||||||||| ||||  |||||||| |||||| |||||||||||||| |||||||| ||||    
T  9556460 caactcattaatcactagatctttcttaatagtttatcttatagtttttcaaggtcttcctttg 9556523  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 18188947 - 18188861
Alignment:
Q  18 tatccagttcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||| ||||||||| |||||  ||||| |||||||| ||||||| ||||| || |||| | | |||||||||||||||||||||    
T  18188947 tatccagctcattaatctctagatctttctgaatagtttctcttataatttttctaagtctccctttgcctctagtgatttgactac 18188861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 19235079 - 19235133
Alignment:
Q  123 tcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||| ||||  |||||| | ||||||||||||||||||||||||||||||    
T  19235079 tcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttc 19235133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 37470228 - 37470322
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtttttt-aggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||||||| |||||  | || ||||||||| |||||||||||||| |||||||| ||| || |||||||| |||||||  ||||| ||||||||    
T  37470228 tcattaatctctagatctgtcctaatagtttctcttatagttttttcaggtcttcctctaccactagtgatctgactaccttccatctaatctac 37470322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 37481708 - 37481766
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||| ||||||||  |||||||| |||||||||| ||||||||||| |||||||    
T  37481708 caactcatttatcgctagatctttcttaatagtttctctaatagtttttcttggtcttc 37481766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 33504393 - 33504332
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||||||||||| ||||||||||||| ||||| ||  ||||||||||||||| |||||||    
T  33504393 tttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctgactac 33504332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 45640622 - 45640699
Alignment:
Q  28 attaatccctagacttttcttaatagtttatcttatag-ttttttaggtcttcttctgcctctagtgatttgactact 104  Q
    ||||||| |||||  |||||||||||||| ||||| || |||||| ||||||  |||||||||||||||| |||||||    
T  45640622 attaatctctagatctttcttaatagtttctcttaaagcttttttgggtctttatctgcctctagtgattggactact 45640699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 12026097 - 12026153
Alignment:
Q  120 aactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    |||||||||||| ||||  |||||||| ||||||||| |||||||| ||||||||||    
T  12026097 aactcattaatctctagatctttcttaatagtttctcctatagtttctctaggtctt 12026153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 38435143 - 38435087
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    |||| |||||||| ||||  |||||||| ||||||||||| ||||||||||||||||    
T  38435143 caacacattaatctctagatctttcttaatagtttctcttgtagtttttctaggtct 38435087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 1626388 - 1626342
Alignment:
Q  117 tacaactcattaatcgctagtcctttcttagtagtttctcttatagt 163  Q
    ||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  1626388 tacaactcattaatctctagatctttcttaatagtttctcttatagt 1626342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 23915788 - 23915830
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttt 68  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||    
T  23915788 tcattaatctctagatttttcttaatagtttctcttatagttt 23915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 26670959 - 26670901
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||   |||||||| |||||||| ||||||||||| |||||||||    
T  26670959 caactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggtcttc 26670901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 33504394 - 33504360
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggt 173  Q
    |||||||| ||||||||||||||||||||||||||    
T  33504394 ctttcttaatagtttctcttatagtttttctaggt 33504360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 37452317 - 37452375
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||| | |||||||| ||| | |||||||| |||||||||||||||    
T  37452317 caactcattaatctctaattctttcttaatagctcctcttataatttttctaggtcttc 37452375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 43832289 - 43832231
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| ||||  | |||||| |||||||||||||||||| | |||||||||    
T  43832289 caactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttc 43832231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 36870027 - 36869991
Alignment:
Q  141 ttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||| |||||||||||||||||||||||| |||||    
T  36870027 ttcttattagtttctcttatagtttttctagctcttc 36869991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 37363102 - 37363134
Alignment:
Q  47 ttaatagtttatcttatagttttttaggtcttc 79  Q
    |||||||||| ||||||||||||||||||||||    
T  37363102 ttaatagtttctcttatagttttttaggtcttc 37363134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 42543426 - 42543370
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||| ||| ||||  | ||| || ||||||||||||||||||||||||||||    
T  42543426 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtct 42543370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 44437812 - 44437868
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtct 175  Q
    ||||||||| ||| ||||  | |||||| ||||||||| ||||||||||||||||||    
T  44437812 caactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtct 44437868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 31261054 - 31261115
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    |||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  31261054 tttcttgatagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgactac 31261115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 36820068 - 36820122
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggt 173  Q
    ||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  36820068 caactcattaatctctagatctttcttaatagtttctcttatagtttttctaggt 36820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 2340810 - 2340865
Alignment:
Q  121 actcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||| ||||  |||||||| ||||||||||||||||||| |||||||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctt 2340865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 11581614 - 11581555
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgact 101  Q
    |||||||||||||| ||||||||||||| ||||||||||  | |||||||||||||||||    
T  11581614 tttcttaatagtttctcttatagtttttctaggtcttctcatacctctagtgatttgact 11581555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 11581615 - 11581576
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttct 178  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  11581615 ctttcttaatagtttctcttatagtttttctaggtcttct 11581576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 21200735 - 21200641
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    ||||||||  |||||  ||||| |||||||| ||| ||||||||| ||||||||| ||| || ||||||||||||||||| ||||| | ||||||    
T  21200735 tcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtcttcctctccccctagtgatttgactactctccatgtgatctac 21200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 39600772 - 39600830
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||| | |||   |||||||| ||||||||||||||||||||||||||||||    
T  39600772 caactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttc 39600830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 40982066 - 40982004
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactact 104  Q
    |||||||||||||  ||||||||||||| ||||||||| | || |||||||||||||||||||    
T  40982066 tttcttaatagttactcttatagtttttctaggtcttcctttgtctctagtgatttgactact 40982004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 20262426 - 20262503
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||| ||| |||||  |||||| |||| |||||||||||||||| | ||||||| ||||||||||||| ||||||||    
T  20262426 tcattgatctctagatctttcttgatagattatcttatagtttttattggtcttcctctgcctctagtgctttgacta 20262503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 37228252 - 37228191
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||||||||  ||||| |||||| ||||||||  |||||||||||||||||||||||    
T  37228252 tttcttaatagtttcccttatcgtttttataggtctttctctgcctctagtgatttgactac 37228191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 40982067 - 40982023
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttcttttgt 183  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||    
T  40982067 ctttcttaatagttactcttatagtttttctaggtcttcctttgt 40982023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 46431770 - 46431822
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctag 171  Q
    ||||||||||||| ||||  |||| ||| ||||||||||||||||||||||||    
T  46431770 caactcattaatctctagatcttttttaatagtttctcttatagtttttctag 46431822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 27893280 - 27893222
Alignment:
Q  119 caactcattaatcgctag-tcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||| |||||| ||| |||||||||||||||| |||||||||||||    
T  27893280 caactcattaatctctaggtccttt-ttaatagtttctcttatagtctttctaggtcttc 27893222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 29475873 - 29475805
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    ||||||||| |||||  ||||||||||||||  ||||||| |||| ||||||||| |||||||||||||||    
T  29475873 tcattaatctctagatctttcttaatagttt--cttatagcttttctaggtcttcctctgcctctagtgat 29475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 40116559 - 40116622
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttg 182  Q
    ||||||||||||| |||   || || || |||||||||||||||||||||||||||||| ||||    
T  40116559 caactcattaatctctaaatctatcctaatagtttctcttatagtttttctaggtcttcctttg 40116622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 43822746 - 43822797
Alignment:
Q  191 ttatccgctatcaactacaagctagcttatctgctatccgctataagctcat 242  Q
    ||||||||||||| ||| ||||||||||||| |  |||||||||||||||||    
T  43822746 ttatccgctatcagctataagctagcttatcagtcatccgctataagctcat 43822797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 46146265 - 46146206
Alignment:
Q  44 ttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||||||| | ||||||||||| ||| ||||| | ||||||||||||||||||||    
T  46146265 ttcttaatagtttcttttatagtttttctagatcttcctatgcctctagtgatttgacta 46146206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 2340812 - 2340890
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagtttt-ttaggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||||  |||||||||||||| ||||||||||||  ||||||||  |||  || |||||||||||||||    
T  2340812 tcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctttctctagctttagtgatttgactac 2340890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 31261053 - 31261091
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31261053 ctttcttgatagtttctcttatagtttttctaggtcttc 31261091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 33755453 - 33755507
Alignment:
Q  42 ttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgat 95  Q
    ||||| ||||||||| ||||||||||||| ||||| ||| |||||||||||||||    
T  33755453 ttttcctaatagtttctcttatagtttttctaggttttcctctgcctctagtgat 33755507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 37598265 - 37598342
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||||  | |||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||| |||||    
T  37598265 tcattaatctctagatatatcttaatagtttctctta-agtttttctaggtcatcttctgcctctggtgatttaactac 37598342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 50960728 - 50960786
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||||||||||| |||  |||||| || |||||||||||| | |||||||||||||||    
T  50960728 caactcattaatctctaaacctttcctaatagtttctcttaaattttttctaggtcttc 50960786  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 54365086 - 54365124
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtcttc 177  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  54365086 ctttcctaatagtttctcttatagtttttctaggtcttc 54365124  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 34844684 - 34844741
Alignment:
Q  42 ttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttg 98  Q
    ||||| ||||||||| ||||||||||||| |||||||| || ||||||||| ||||||    
T  34844684 ttttcctaatagtttctcttatagtttttctaggtctttttgtgcctctagggatttg 34844741  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 37084071 - 37084124
Alignment:
Q  209 aagctagcttatctgctatccgctataagctcattcactatcaactagattatc 262  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| | |||| |||||    
T  37084071 aagctagcttatcagctatccactataagttcattcactataagctagcttatc 37084124  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 37228098 - 37228037
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||||||||  ||||| |||||| ||||||||  ||||||||| |||||||||||||    
T  37228098 tttcttaatagtttcccttatcgtttttataggtctttctctgcctctggtgatttgactac 37228037  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 41452831 - 41452888
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||||| ||||  |||||||| ||||||  ||||||||||||||| |||||    
T  41452831 caactcattaatctctagatctttcttaatagtttaacttatagtttttctatgtctt 41452888  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 43308753 - 43308696
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||| ||||||| ||||   ||||||| ||||||||||| |||||||||||||||||    
T  43308753 caactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggtctt 43308696  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 44395567 - 44395518
Alignment:
Q  70 ttaggtcttcttctgcctctagtgatttgactactatccatttaatctac 119  Q
    |||||| ||| |||||||||||||||||||||||  ||||||| ||||||    
T  44395567 ttaggttttcctctgcctctagtgatttgactaccctccatttgatctac 44395518  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 45486963 - 45487000
Alignment:
Q  139 ctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||| || |||||||||||||||||||||||||||||    
T  45486963 ctttcataatagtttctcttatagtttttctaggtctt 45487000  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 34844693 - 34844721
Alignment:
Q  148 tagtttctcttatagtttttctaggtctt 176  Q
    |||||||||||||||||||||||||||||    
T  34844693 tagtttctcttatagtttttctaggtctt 34844721  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 36820072 - 36820116
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt 70  Q
    ||||||||| |||||  |||||||||||||| |||||||||||||    
T  36820072 tcattaatctctagatctttcttaatagtttctcttatagttttt 36820116  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 39535533 - 39535569
Alignment:
Q  74 gtcttcttctgcctctagtgatttgactactatccat 110  Q
    |||| |||||||||||||||||||||||||| |||||    
T  39535533 gtctacttctgcctctagtgatttgactactctccat 39535569  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 41452835 - 41452879
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt 70  Q
    ||||||||| |||||  ||||||||||||||| ||||||||||||    
T  41452835 tcattaatctctagatctttcttaatagtttaacttatagttttt 41452879  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 43308747 - 43308671
Alignment:
Q  28 attaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||  | || |||||| || ||||||||    
T  43308747 attaatctctagatttttcttaatagtttctcttgtagtttttctaggtcttactttgtctctagagaattgactac 43308671  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 54365087 - 54365147
Alignment:
Q  43 tttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||||||||| ||| | ||||||    
T  54365087 tttcctaatagtttctcttatagtttttctaggtcttcctctgcctctcgtggtctgacta 54365147  T

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Target: scaffold0325 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 11984 - 11906
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgactac 103  Q
    ||||||||| |||||   ||||||||||||| ||||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  11984 tcattaatctctagatccttcttaatagtttctcttatagtttttctagttcttcttttgcctctagtgatttcactac 11906  T

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Target: scaffold0325; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 11986 - 11925
Alignment:
Q  121 actcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtcttcttttg 182  Q
    ||||||||||| ||||  | |||||| |||||||||||||||||||||||| ||||||||||    
T  11986 actcattaatctctagatccttcttaatagtttctcttatagtttttctagttcttcttttg 11925  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 178511 - 178568
Alignment:
Q  119 caactcattaatcgctagtcctttcttagtagtttctcttatagtttttctaggtctt 176  Q
    ||||||||||||| |||   |||||||| |||||||||||||||||||||||||||||    
T  178511 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctt 178568  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 178515 - 178592
Alignment:
Q  26 tcattaatccctagacttttcttaatagtttatcttatagttttt-taggtcttcttctgcctctagtgatttgacta 102  Q
    ||||||||| ||| |  |||||||||||||| ||||||||||||| ||||||||  || |||||||||||| ||||||    
T  178515 tcattaatctctatatctttcttaatagtttctcttatagtttttctaggtcttactccgcctctagtgatatgacta 178592  T

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Target: scaffold0491 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 3939 - 3988
Alignment:
Q  42 ttttcttaatagtttatcttatagttttttaggtcttcttctgcctctag 91  Q
    |||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  3939 ttttctaaatagtttctcttatagttttttaggtctacctctgcctctag 3988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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