View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5966_low_2 (Length: 518)

Name: NF5966_low_2
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5966_low_2
NF5966_low_2
[»] chr4 (3 HSPs)
chr4 (17-211)||(52523082-52523275)
chr4 (271-305)||(13004176-13004210)
chr4 (271-304)||(15474461-15474494)
[»] chr6 (6 HSPs)
chr6 (330-419)||(32559114-32559202)
chr6 (271-305)||(12359034-12359068)
chr6 (271-305)||(20059751-20059785)
chr6 (271-305)||(20112023-20112057)
chr6 (271-305)||(22802920-22802954)
chr6 (271-305)||(25734738-25734772)
[»] chr7 (10 HSPs)
chr7 (118-211)||(32439613-32439704)
chr7 (79-136)||(12912498-12912555)
chr7 (79-136)||(12923488-12923545)
chr7 (271-306)||(4822229-4822264)
chr7 (271-305)||(332448-332482)
chr7 (271-305)||(9160693-9160727)
chr7 (271-305)||(13259953-13259987)
chr7 (271-305)||(15887586-15887620)
chr7 (271-305)||(18420113-18420147)
chr7 (271-305)||(22577347-22577381)
[»] scaffold1260 (1 HSPs)
scaffold1260 (262-305)||(2091-2133)
[»] scaffold0607 (1 HSPs)
scaffold0607 (270-305)||(7720-7755)
[»] chr8 (8 HSPs)
chr8 (270-305)||(23184563-23184598)
chr8 (271-305)||(3597684-3597718)
chr8 (271-305)||(19225874-19225908)
chr8 (271-305)||(19419341-19419375)
chr8 (271-305)||(21289164-21289198)
chr8 (271-305)||(30324557-30324591)
chr8 (271-304)||(20381707-20381740)
chr8 (277-305)||(19927847-19927875)
[»] scaffold1948 (1 HSPs)
scaffold1948 (271-305)||(230-264)
[»] scaffold1002 (1 HSPs)
scaffold1002 (271-305)||(3178-3212)
[»] scaffold0414 (1 HSPs)
scaffold0414 (271-305)||(6408-6442)
[»] scaffold0315 (1 HSPs)
scaffold0315 (271-305)||(18715-18749)
[»] scaffold0269 (1 HSPs)
scaffold0269 (271-305)||(8116-8150)
[»] scaffold0207 (1 HSPs)
scaffold0207 (271-305)||(21446-21480)
[»] scaffold0203 (1 HSPs)
scaffold0203 (271-305)||(23394-23428)
[»] scaffold0173 (1 HSPs)
scaffold0173 (271-305)||(24635-24669)
[»] scaffold0056 (1 HSPs)
scaffold0056 (271-305)||(34083-34117)
[»] scaffold0011 (1 HSPs)
scaffold0011 (271-305)||(134665-134699)
[»] scaffold0004 (1 HSPs)
scaffold0004 (271-305)||(30148-30182)
[»] chr5 (7 HSPs)
chr5 (271-305)||(1110041-1110075)
chr5 (271-305)||(20561657-20561691)
chr5 (271-305)||(23405788-23405822)
chr5 (271-305)||(24927036-24927070)
chr5 (271-305)||(30743808-30743842)
chr5 (277-305)||(20797040-20797068)
chr5 (238-285)||(25935531-25935579)
[»] chr3 (5 HSPs)
chr3 (271-305)||(7803758-7803792)
chr3 (271-305)||(15834294-15834328)
chr3 (271-305)||(17909255-17909289)
chr3 (271-305)||(22141548-22141582)
chr3 (271-303)||(18140855-18140887)
[»] chr2 (3 HSPs)
chr2 (271-305)||(21171682-21171716)
chr2 (271-305)||(22454260-22454294)
chr2 (271-305)||(28731145-28731179)
[»] chr1 (3 HSPs)
chr1 (271-305)||(7680149-7680183)
chr1 (271-305)||(20953701-20953735)
chr1 (271-305)||(36134927-36134961)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 52523275 - 52523082
Alignment:
Q  17 aaggtaacaaacattcacaatccgaaacaaattaaagcctaattgtgtaaggccgtagatcagtgacagatctagatggttttgcttgtttcaccagcaa 116  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||    
T  52523275 aaggtaacaaacattcacaatccaaaacaaattaaagcctaattgtgtaagacagtagatcactgacagatctagatggttttgcttgtttcaccagcaa 52523176  T
Q  117 aatttagattactggagtggagtgtttatcgtcggattcgtcgaaactcagaacctttgtcaccggagaagatatagtgaggtggtccggttcaa 211  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||    
T  52523175 aatttagattgctggagtggattgtttatcgtcggattcgtcgaaactcagaacc-ttgttgccggagaagataaagtgaggtggtccggttcaa 52523082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 13004210 - 13004176
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  13004210 tatacatctactcccccttttgtcatcaacaaaaa 13004176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 15474494 - 15474461
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaa 304  Q
    ||||| ||||||||||||||||||||||||||||    
T  15474494 tatacatctactcccccttttgtcatcaacaaaa 15474461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 32559114 - 32559202
Alignment:
Q  330 aatcattcattcagaagcagaatgctgttttaaacaagcataaagtagttacaaaaccaaaaatttgtgagatgacaagtgcaaaacaat 419  Q
    ||||||||||||| ||||| |||  |||||||| |||||| ||| ||||||||||||| ||| ||||| | |||||||||||||||||||    
T  32559114 aatcattcattcataagcaaaatattgttttaagcaagcaaaaattagttacaaaacc-aaagtttgtcaaatgacaagtgcaaaacaat 32559202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 12359034 - 12359068
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  12359034 tatacatctactcccccttttgtcatcaacaaaaa 12359068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 20059785 - 20059751
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  20059785 tatacatctactcccccttttgtcatcaacaaaaa 20059751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 20112057 - 20112023
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  20112057 tatacatctactcccccttttgtcatcaacaaaaa 20112023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 22802920 - 22802954
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  22802920 tatacatctactcccccttttgtcatcaacaaaaa 22802954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 25734772 - 25734738
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    |||||| ||||||||||||||||||||||||||||    
T  25734772 tatactactactcccccttttgtcatcaacaaaaa 25734738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 32439613 - 32439704
Alignment:
Q  118 atttagattactggagtggagtgtttatcgtcggattcgtcgaaactcagaacctttgtcaccggagaagatatagtgaggtggtccggttcaa 211  Q
    |||| |||| |||||||||||||||||| || |||||| || |||||| ||||  ||||| |||||||||||  ||| ||||||| ||||||||    
T  32439613 attttgattgctggagtggagtgtttattgttggattcttccaaactcggaac--ttgtcgccggagaagatgaagttaggtggttcggttcaa 32439704  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 12912555 - 12912498
Alignment:
Q  79 gtgacagatctagatggttttgcttgtttcaccagcaaaatttagattactggagtgg 136  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||| | |||||||    
T  12912555 gtgacagatctatagggttttgcttgattcaccaacaaaatttagattgccggagtgg 12912498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 12923488 - 12923545
Alignment:
Q  79 gtgacagatctagatggttttgcttgtttcaccagcaaaatttagattactggagtgg 136  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||| | |||||||    
T  12923488 gtgacagatctatagggttttgcttgattcaccaacaaaatttagattgccggagtgg 12923545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 4822229 - 4822264
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaac 306  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4822229 tatacatctactcccccttttgtcatcaacaaaaac 4822264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 332448 - 332482
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  332448 tatacatctactcccccttttgtcatcaacaaaaa 332482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 9160693 - 9160727
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  9160693 tatacatctactcccccttttgtcatcaacaaaaa 9160727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 13259987 - 13259953
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  13259987 tatacatctactcccccttttgtcatcaacaaaaa 13259953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 15887620 - 15887586
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  15887620 tatacatctactcccccttttgtcatcaacaaaaa 15887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 18420113 - 18420147
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    |||| ||||||||||||||||||||||||||||||    
T  18420113 tatatttctactcccccttttgtcatcaacaaaaa 18420147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 22577381 - 22577347
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  22577381 tatacatctactcccccttttgtcatcaacaaaaa 22577347  T

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Target: scaffold1260 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 2133 - 2091
Alignment:
Q  262 ttaaatacttatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  2133 ttaaatact-atacatctactcccccttttgtcatcaacaaaaa 2091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 7720 - 7755
Alignment:
Q  270 ttatacttctactcccccttttgtcatcaacaaaaa 305  Q
    |||||| |||||||||||||||||||||||||||||    
T  7720 ttatacatctactcccccttttgtcatcaacaaaaa 7755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 23184598 - 23184563
Alignment:
Q  270 ttatacttctactcccccttttgtcatcaacaaaaa 305  Q
    |||||| |||||||||||||||||||||||||||||    
T  23184598 ttatacatctactcccccttttgtcatcaacaaaaa 23184563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 3597718 - 3597684
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  3597718 tatacatctactcccccttttgtcatcaacaaaaa 3597684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 19225874 - 19225908
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  19225874 tatacatctactcccccttttgtcatcaacaaaaa 19225908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 19419341 - 19419375
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  19419341 tatacatctactcccccttttgtcatcaacaaaaa 19419375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 21289164 - 21289198
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  21289164 tatacatctactcccccttttgtcatcaacaaaaa 21289198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 30324591 - 30324557
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  30324591 tatacatctactcccccttttgtcatcaacaaaaa 30324557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 20381740 - 20381707
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaa 304  Q
    ||||| ||||||||||||||||||||||||||||    
T  20381740 tatacatctactcccccttttgtcatcaacaaaa 20381707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 19927847 - 19927875
Alignment:
Q  277 tctactcccccttttgtcatcaacaaaaa 305  Q
    |||||||||||||||||||||||||||||    
T  19927847 tctactcccccttttgtcatcaacaaaaa 19927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1948 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 230 - 264
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  230 tatacatctactcccccttttgtcatcaacaaaaa 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1002
Description:

Target: scaffold1002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 3212 - 3178
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  3212 tatacatctactcccccttttgtcatcaacaaaaa 3178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 6442 - 6408
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  6442 tatacatctactcccccttttgtcatcaacaaaaa 6408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 18715 - 18749
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  18715 tatacatctactcccccttttgtcatcaacaaaaa 18749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 8116 - 8150
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  8116 tatacatctactcccccttttgtcatcaacaaaaa 8150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 21446 - 21480
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  21446 tatacatctactcccccttttgtcatcaacaaaaa 21480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 23428 - 23394
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  23428 tatacatctactcccccttttgtcatcaacaaaaa 23394  T

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Target: scaffold0173 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 24669 - 24635
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  24669 tatacatctactcccccttttgtcatcaacaaaaa 24635  T

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Target: scaffold0056 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 34117 - 34083
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  34117 tatacatctactcccccttttgtcatcaacaaaaa 34083  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 134699 - 134665
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  134699 tatacatctactcccccttttgtcatcaacaaaaa 134665  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 30182 - 30148
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  30182 tatacatctactcccccttttgtcatcaacaaaaa 30148  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 1110041 - 1110075
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  1110041 tatacatctactcccccttttgtcatcaacaaaaa 1110075  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 20561691 - 20561657
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  20561691 tatacatctactcccccttttgtcatcaacaaaaa 20561657  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 23405822 - 23405788
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  23405822 tatacatctactcccccttttgtcatcaacaaaaa 23405788  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 24927036 - 24927070
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  24927036 tatacatctactcccccttttgtcatcaacaaaaa 24927070  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 30743808 - 30743842
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  30743808 tatacatctactcccccttttgtcatcaacaaaaa 30743842  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 20797068 - 20797040
Alignment:
Q  277 tctactcccccttttgtcatcaacaaaaa 305  Q
    |||||||||||||||||||||||||||||    
T  20797068 tctactcccccttttgtcatcaacaaaaa 20797040  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 25935579 - 25935531
Alignment:
Q  238 tctttttacgtttagactcagaac-ttaaatacttatacttctactccc 285  Q
    ||||||| ||||||||||||| || ||||||||||||||| ||||||||    
T  25935579 tctttttgcgtttagactcaggaccttaaatacttatactactactccc 25935531  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 7803792 - 7803758
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  7803792 tatacatctactcccccttttgtcatcaacaaaaa 7803758  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 15834294 - 15834328
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  15834294 tatacatctactcccccttttgtcatcaacaaaaa 15834328  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 17909289 - 17909255
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  17909289 tatacatctactcccccttttgtcatcaacaaaaa 17909255  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 22141548 - 22141582
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  22141548 tatacatctactcccccttttgtcatcaacaaaaa 22141582  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 18140887 - 18140855
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaa 303  Q
    ||||| |||||||||||||||||||||||||||    
T  18140887 tatacatctactcccccttttgtcatcaacaaa 18140855  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 21171716 - 21171682
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  21171716 tatacatctactcccccttttgtcatcaacaaaaa 21171682  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 22454294 - 22454260
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  22454294 tatacatctactcccccttttgtcatcaacaaaaa 22454260  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 28731179 - 28731145
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  28731179 tatacatctactcccccttttgtcatcaacaaaaa 28731145  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 7680149 - 7680183
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  7680149 tatacatctactcccccttttgtcatcaacaaaaa 7680183  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 20953735 - 20953701
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  20953735 tatacatctactcccccttttgtcatcaacaaaaa 20953701  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 36134927 - 36134961
Alignment:
Q  271 tatacttctactcccccttttgtcatcaacaaaaa 305  Q
    ||||| |||||||||||||||||||||||||||||    
T  36134927 tatacatctactcccccttttgtcatcaacaaaaa 36134961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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