View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5966_low_4 (Length: 345)
Name: NF5966_low_4
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5966_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 55475089 - 55475404
Alignment:
| Q |
21 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
55475089 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcattaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
55475188 |
T |
|
| Q |
121 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55475189 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
55475288 |
T |
|
| Q |
221 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55475289 |
aatggatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
55475388 |
T |
|
| Q |
315 |
gaaacccatataaatg |
330 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
55475389 |
gaaacccatataaatg |
55475404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 330
Target Start/End: Original strand, 92152 - 92467
Alignment:
| Q |
21 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| | |||||||||||| |
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| T |
92152 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggtaaaattgtttat |
92251 |
T |
|
| Q |
121 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
92252 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatatagaatttgagatctggaactattaccttaattttggtaat |
92351 |
T |
|
| Q |
221 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92352 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
92451 |
T |
|
| Q |
315 |
gaaacccatataaatg |
330 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
92452 |
gaaacccatataaatg |
92467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 330
Target Start/End: Complemental strand, 41886235 - 41885928
Alignment:
| Q |
29 |
tcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttatccaacaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
41886235 |
tcctttccttcatctctccatcttggtcttcatttttaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttatccaacaac |
41886136 |
T |
|
| Q |
129 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaataatagatc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41886135 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgatatctggaactattaccttaattttggtaataattgatc |
41886036 |
T |
|
| Q |
229 |
tagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctatgaaaccca |
322 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41886035 |
tagtatgcctaaccaatttttttttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctatgaaaccca |
41885936 |
T |
|
| Q |
323 |
tataaatg |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
41885935 |
tataaatg |
41885928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 27277482 - 27277167
Alignment:
| Q |
21 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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|
| T |
27277482 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggcaaaattgtttat |
27277383 |
T |
|
| Q |
121 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27277382 |
ccaacaacttcatattctccctttcatcatttctctctcattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
27277283 |
T |
|
| Q |
221 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27277282 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacataatactggtgagctacaatcagaaggaatctat |
27277183 |
T |
|
| Q |
315 |
gaaacccatataaatg |
330 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
27277182 |
gaaacccatataaatg |
27277167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 330
Target Start/End: Complemental strand, 20901251 - 20900936
Alignment:
| Q |
21 |
aaccgtattcctttccttcatctctcc-----atcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattg |
115 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
20901251 |
aaccgtattcctttccctcatctctcctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatggatttgggcaaaattg |
20901152 |
T |
|
| Q |
116 |
tttatccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttg |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20901151 |
tttatccaacaac---atattctccctttcatcatttctctcccat--atctaaaactctgatttagaatttgagatctggaactattaccttaattttg |
20901057 |
T |
|
| Q |
216 |
gtaataatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaa |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
20901056 |
gtaataatagatctagtatgccgaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataatagaatactggtaagctacaatcagaaggaa |
20900957 |
T |
|
| Q |
310 |
tctatgaaacccatataaatg |
330 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
20900956 |
tctctgaaacccatataaatg |
20900936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 33 - 330
Target Start/End: Original strand, 48379610 - 48379938
Alignment:
| Q |
33 |
ttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttatcc---------a |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||| ||||| | |||||||||||||| | |
|
|
| T |
48379610 |
ttccttcatctctccatcttggtcttcattttcaattcatagaagaacacaaaaatcagaactcatgaatttgggtaaaattgtttatccaacaactgaa |
48379709 |
T |
|
| Q |
124 |
acaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctgga----------------actattacct |
207 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
48379710 |
acaacttcatattcaccctttcattctttctctcccattcaactaaaactctgatttagaaattgagatctggacaaccacaaatattgtagcattacct |
48379809 |
T |
|
| Q |
208 |
taattttggtaataatagatctagtatgcctaaccaatttcattttatc------aacatgctattaatcaaaataacagaatactggtgagctacaatc |
301 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||| | |||||||||||||||| ||| |||| ||||| ||||||| |
|
|
| T |
48379810 |
taattttcgtaataatagaactagtatgcctaatcaattttattttatcaccaaaaacgtcctattaatcaaaataatagagtactagtgagttacaatc |
48379909 |
T |
|
| Q |
302 |
agaaggaatctatgaaacccatataaatg |
330 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
48379910 |
agaaggaatttatgaaacccatataaatg |
48379938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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