View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5966_low_5 (Length: 294)
Name: NF5966_low_5
Description: NF5966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5966_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 6871538 - 6871272
Alignment:
| Q |
11 |
cacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaattg |
110 |
Q |
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| T |
6871538 |
cacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaattg |
6871439 |
T |
|
| Q |
111 |
taatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactgctgcacatttaatta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6871438 |
taatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactactgcacatttaatta |
6871339 |
T |
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| Q |
211 |
acggcatgccaaatttattttannnnnnngaatgacaaatgttagtagttagttattagattagtat |
277 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6871338 |
acggcatgccaaatttattttatttttttaaatgacaaatgttagtagttagttattagattagtat |
6871272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 48308090 - 48308128
Alignment:
| Q |
241 |
aatgacaaatgttagtagttagttattagattagtattt |
279 |
Q |
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| T |
48308090 |
aatgacaaatgttagtagttagttgttagattaatattt |
48308128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 54913673 - 54913706
Alignment:
| Q |
246 |
caaatgttagtagttagttattagattagtattt |
279 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
54913673 |
caaatgttagtagttagttgttagattagtattt |
54913706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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