View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967-Insertion-1 (Length: 1069)
Name: NF5967-Insertion-1
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Complemental strand, 25777763 - 25777280
Alignment:
| Q |
8 |
agttgttgtactacgagactttaaacactgtgccactcttcaatattcatcctgcaagtgggttgctcatccaattacttgcgtgcttgttttgttctgt |
107 |
Q |
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| T |
25777763 |
agttgttgtactacgagactttaaacattgtgccactcttcaatattcatcctgcaagtgggttgctcatccaattacttgcgtgcttgttttgttctgt |
25777664 |
T |
|
| Q |
108 |
ttgttgacaaattttcaggtttctgtgtt--cataagctccacaaaaccgtgaaaaaaggttcactttgacccggagaaagttgatgcaaattaaagagt |
205 |
Q |
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| T |
25777663 |
t-gttgacaaattttcaggtttctgtgtttccataaactccacaaaaccgtgaaaaaaggttcactttgaaccggagaaagttgatgcaaa----agagt |
25777569 |
T |
|
| Q |
206 |
gaaaaccagagcatctatattgtaattttgacgaagaaccttgtcaatagaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactct |
305 |
Q |
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| T |
25777568 |
gaaaaccagagcatctatattgtaattttgatgaagaaccttgtcaattgaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactct |
25777469 |
T |
|
| Q |
306 |
atcaaaacatggatgatgccttcataattacttccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttggga |
405 |
Q |
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| T |
25777468 |
atcaaaacatggatgatgccttcataattacttccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttggga |
25777369 |
T |
|
| Q |
406 |
accacccatggcacaccctatgaacataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
494 |
Q |
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| T |
25777368 |
accacccatggcacaccctatgaacataattcttgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 586 - 988
Target Start/End: Complemental strand, 1538928 - 1538521
Alignment:
| Q |
586 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
|
| Q |
686 |
tattatttggtataaagtttcatgttgtattgtttcccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
785 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538828 |
tattatttggtataaagtttcatgttgtattgttttccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
1538729 |
T |
|
| Q |
786 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtagtacgagaagaaattatgtgctgtgttaatttcg-agacaatgaaccttcaa |
884 |
Q |
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| T |
1538728 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtcgtatgagaagaaattatgtgctctgttaatttcgaagacaatgaaccttcaa |
1538629 |
T |
|
| Q |
885 |
gnnnnnnngattggcagacatctgaaacatcttttcaccctttgatttctcaaga-taaggg--ttcctctatatgaattccctgcatattatgata-ta |
980 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||| || |
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| T |
1538628 |
gtttttttgattggcagacatctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatatta |
1538529 |
T |
|
| Q |
981 |
aacacttt |
988 |
Q |
| |
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|||||||| |
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| T |
1538528 |
aacacttt |
1538521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 586 - 988
Target Start/End: Complemental strand, 17768975 - 17768568
Alignment:
| Q |
586 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
|
| Q |
686 |
tattatttggtataaagtttcatgttgtattgtttcccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
785 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768875 |
tattatttggtataaagtttcatgttgtattgttttccgatttgataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgct |
17768776 |
T |
|
| Q |
786 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtagtacgagaagaaattatgtgctgtgttaatttcg-agacaatgaaccttcaa |
884 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
17768775 |
gctttaagtgaaactggacagtttccaccaaaactattgaaggaggtcgtatgagaagaaattatgtgctctgttaatttcgaagacaatgaaccttcaa |
17768676 |
T |
|
| Q |
885 |
gnnnnnnngattggcagacatctgaaacatcttttcaccctttgatttctcaaga-taaggg--ttcctctatatgaattccctgcatattatgata-ta |
980 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||| || |
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| T |
17768675 |
gtttttttgattggcagacatctgaaacatcttttcaacctttgatttctcaagattaagggttttcctctatatgattttcctgcatattatgatatta |
17768576 |
T |
|
| Q |
981 |
aacacttt |
988 |
Q |
| |
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|||||||| |
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|
| T |
17768575 |
aacacttt |
17768568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 737 - 815
Target Start/End: Complemental strand, 44178407 - 44178329
Alignment:
| Q |
737 |
ttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccacca |
815 |
Q |
| |
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|||||||| ||||||||| | |||| ||||||||| | ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
44178407 |
ttcgaaagctggagaggtcccggttagattaactcgcgcacgagctgctgctttaagtgcaactggacagttgccacca |
44178329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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