View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5967-Insertion-2 (Length: 950)

Name: NF5967-Insertion-2
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5967-Insertion-2
NF5967-Insertion-2
[»] chr4 (15 HSPs)
chr4 (8-950)||(7755551-7756488)
chr4 (558-950)||(7763004-7763398)
chr4 (577-835)||(7839792-7840050)
chr4 (8-88)||(7749932-7750011)
chr4 (420-499)||(7840117-7840196)
chr4 (241-307)||(43980639-43980705)
chr4 (241-301)||(29180331-29180391)
chr4 (241-300)||(50768586-50768645)
chr4 (241-303)||(38187645-38187707)
chr4 (241-285)||(9798010-9798054)
chr4 (241-301)||(10591422-10591482)
chr4 (241-301)||(30776403-30776463)
chr4 (241-285)||(49902168-49902212)
chr4 (241-300)||(29899856-29899915)
chr4 (241-300)||(39969909-39969968)
[»] chr5 (5 HSPs)
chr5 (241-315)||(35462658-35462732)
chr5 (241-300)||(31316755-31316814)
chr5 (241-300)||(8145967-8146026)
chr5 (243-289)||(2002100-2002146)
chr5 (244-301)||(31690573-31690630)
[»] chr1 (15 HSPs)
chr1 (241-303)||(36037381-36037443)
chr1 (241-302)||(40935568-40935629)
chr1 (241-301)||(40960430-40960490)
chr1 (241-301)||(23873783-23873843)
chr1 (241-285)||(44875323-44875367)
chr1 (241-301)||(46949465-46949525)
chr1 (241-300)||(26907048-26907107)
chr1 (257-305)||(6848262-6848310)
chr1 (241-285)||(35941985-35942029)
chr1 (245-304)||(18852371-18852430)
chr1 (241-304)||(25990892-25990955)
chr1 (241-303)||(39026199-39026262)
chr1 (246-300)||(31970266-31970320)
chr1 (241-302)||(28017800-28017861)
chr1 (244-285)||(35189349-35189390)
[»] chr3 (14 HSPs)
chr3 (245-302)||(36188920-36188977)
chr3 (241-303)||(21654390-21654452)
chr3 (241-303)||(53020328-53020390)
chr3 (241-302)||(55400883-55400944)
chr3 (241-301)||(26641027-26641087)
chr3 (244-303)||(32322152-32322211)
chr3 (241-303)||(37323996-37324058)
chr3 (244-300)||(51309561-51309618)
chr3 (241-285)||(31126357-31126401)
chr3 (241-285)||(34022744-34022788)
chr3 (241-285)||(46580680-46580724)
chr3 (241-300)||(16739081-16739140)
chr3 (241-304)||(45347625-45347688)
chr3 (241-302)||(46295990-46296051)
[»] chr8 (12 HSPs)
chr8 (241-301)||(44411163-44411223)
chr8 (241-302)||(35260204-35260265)
chr8 (241-300)||(27621277-27621336)
chr8 (241-303)||(37598216-37598278)
chr8 (243-300)||(2238550-2238607)
chr8 (243-300)||(24510652-24510709)
chr8 (241-302)||(25321539-25321600)
chr8 (241-285)||(3100100-3100144)
chr8 (241-285)||(11044204-11044248)
chr8 (241-293)||(44052768-44052820)
chr8 (241-284)||(27752733-27752776)
chr8 (241-299)||(37566453-37566511)
[»] chr2 (12 HSPs)
chr2 (241-301)||(35832556-35832616)
chr2 (241-303)||(15858639-15858701)
chr2 (241-301)||(33635480-33635540)
chr2 (241-305)||(38071398-38071462)
chr2 (241-300)||(792309-792368)
chr2 (241-300)||(21539901-21539960)
chr2 (241-303)||(14565323-14565385)
chr2 (241-303)||(43075893-43075955)
chr2 (241-302)||(10979313-10979374)
chr2 (241-301)||(10478322-10478382)
chr2 (241-285)||(38549611-38549655)
chr2 (243-289)||(13822731-13822777)
[»] scaffold0495 (1 HSPs)
scaffold0495 (241-301)||(4774-4834)
[»] chr7 (15 HSPs)
chr7 (241-305)||(21654028-21654092)
chr7 (241-293)||(32491026-32491078)
chr7 (241-301)||(43107816-43107876)
chr7 (241-303)||(35084009-35084072)
chr7 (241-300)||(35181335-35181394)
chr7 (244-300)||(18206231-18206287)
chr7 (244-304)||(18800675-18800735)
chr7 (241-285)||(19932982-19933026)
chr7 (241-301)||(47383549-47383609)
chr7 (241-300)||(3157579-3157638)
chr7 (243-289)||(30082496-30082542)
chr7 (244-310)||(40593964-40594029)
chr7 (241-297)||(22111244-22111301)
chr7 (244-301)||(29235980-29236037)
chr7 (241-297)||(40583288-40583345)
[»] chr6 (7 HSPs)
chr6 (241-301)||(10228056-10228116)
chr6 (241-300)||(5121410-5121469)
chr6 (241-285)||(12278850-12278894)
chr6 (241-301)||(17721762-17721822)
chr6 (241-301)||(30949279-30949339)
chr6 (241-300)||(374243-374302)
chr6 (241-287)||(21964101-21964147)


Alignment Details
Target: chr4 (Bit Score: 828; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 8 - 950
Target Start/End: Complemental strand, 7756488 - 7755551
Alignment:
Q  8 aaataagtgtatgcatgattacatttacaatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaagttggagttggagtcctac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756488 aaataagtgtatgcatgattacatttacaatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaagttggagttggagtcctac 7756389  T
Q  108 nnnnnnnaatgactacagtggctcaagttctgattcatgagttctagtcttctagatggcagcatgcatttcgtggaatgcactcaataattatgcaatt 207  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7756388 tttttttaatgactacagtggctcaagttctgattcatgagttctagtcttctagatggcagcatgcctttcgtggaatgcactcaataattatgcaatt 7756289  T
Q  208 tgcattaaataaaactaattatttattcaaatatagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatat 307  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7756288 tgcattaaataaaactaattatttattcaaatatagttt-cttagtaagtgtgaattggtgtttttgtcttataaattgggatggaaggagtatatatat 7756190  T
Q  308 tatgataatgttgagtattatggagtgttttgtattttacggttaaagtcaaatccatgattcatatnnnnnnnntaaagagagttgagtacgtgacttt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||  |||||||||||||||||||||    
T  7756189 tatgataatgttgagtattatggagtgttttgtattttacggttaaagtcaaatccatgattcatataaaaaaaata--gagagttgagtacgtgacttt 7756092  T
Q  408 ccaattaactctgcatcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctac 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7756091 ccaattaactctgcatcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaaccattctac 7755992  T
Q  508 aattttacacataaacctcaaaactcaaaattaaaacttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgag 607  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7755991 aattttacacataaacctcaaaactcaaaattaaa-cttcaccataatcttcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgag 7755893  T
Q  608 tttcagaggcggaacacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7755892 tttcagaggcggaacacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatc 7755793  T
Q  708 ggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttg 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7755792 ggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgtaaagaatatgcttcttcaacttggtgccttg 7755693  T
Q  808 atgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgttatattttataagatggaacctagcgatgttaggtatcagaaaaa 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  7755692 atgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggttttcgttata-tttat-agatggaacctagcgatgttaggtatcagaaaaa 7755595  T
Q  908 tagttatg-agatgctattaggaaacatgaaaagagatttggaa 950  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  7755594 tagttatgaagatgctattaggaaacatgaaaagagatttggaa 7755551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 558 - 950
Target Start/End: Complemental strand, 7763398 - 7763004
Alignment:
Q  558 tcatcaatggcaaatcactacgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcac 657  Q
    ||||||||||| |||||| | ||  ||||||| |||||  | ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |  || |    
T  7763398 tcatcaatggcgaatcacaatgattatttcacacacgacatatttctgagtttcagaggcggaactcgctactccttcacggatcatctctatcactctc 7763299  T
Q  658 ttctccgtcaaggaatcaacgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaat 757  Q
    |||||||||| ||||||||||| ||||||||||| |||||| |||| |||||  ||||||||||| ||||||| ||| ||||||| ||||||||||||||    
T  7763298 ttctccgtcatggaatcaacgtcttcagagacgatcaaaacatcaacatcggtgatgaaatcggaacttcacttctaaaagcaattgaagcttctagaat 7763199  T
Q  758 ctcaatcgttgtgctgtgtaaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgttatgaaaataatggaaaatcggtt 857  Q
    ||||||||||||| ||||    || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| || ||| ||||||| ||     
T  7763198 ctcaatcgttgtgttgtgccgtgattatgcttcttccacttggtgccttgatgaactagtcaagatcgttgactgttatgacaaaaatagaaaatcagta 7763099  T
Q  858 ttcgttatattttataagatggaacctagcgatgttaggta-tcagaaaaatagttatgaga-tgctattaggaaacatgaaaagagatttggaa 950  Q
    || ||||| ||||||||||| ||||||   ||||||||||| |||||  ||||||||||| | ||| || | |||||||||||| ||||||||||    
T  7763098 tttgttattttttataagatagaaccttcagatgttaggtagtcagaggaatagttatgaaattgcaatgatgaaacatgaaaatagatttggaa 7763004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 577 - 835
Target Start/End: Complemental strand, 7840050 - 7839792
Alignment:
Q  577 acgaagatttcactcacgatgtttttctgagtttcagaggcggaacacgctactctttcaccgatcatctctaccgttcacttctccgtcaaggaatcaa 676  Q
    ||||||| ||||||||||| ||||| || |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7840050 acgaagacttcactcacgacgttttcctcagtttcagaggcagaactcgctactccttcaccgatcatctctaccgttcacttctccgtcacggaatcaa 7839951  T
Q  677 cgttttcagagacgaccaaaacctcaagatcggccatgaaatcggaccttcactcctacaagcaatcgaagcttctagaatctcaatcgttgtgctgtgt 776  Q
    ||| ||||||||| | | |||||| || |||||| | |||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  7839950 cgtcttcagagacaatccaaaccttaacatcggcgacgaaatcagactttcacttctacaagcaatcgaagcttctagaatttcaatcgttgttctgtgt 7839851  T
Q  777 aaagactatgcttcttcaacttggtgccttgatgaacttgttaagatcgttgactgtta 835  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7839850 aaagactacgcttcttccacttggtgccttgacgaacttgttaagatcgttgactgtta 7839792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 7750011 - 7749932
Alignment:
Q  8 aaataagtgtatgcatgattacatttacaatatatttatgcaacatccatcaatgtgaccatcttaattgcatgattacaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  7750011 aaataagtgtatgcatgattacatttacaatatatttatgcaacatccatcaatgt-actatcttaattgcatgattacaa 7749932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 420 - 499
Target Start/End: Complemental strand, 7840196 - 7840117
Alignment:
Q  420 gcatcatcatgtagaccgtttctttgtaatcccgcattcttctgacttttgaagctccacacttcatttaaaacttaaac 499  Q
    |||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||| ||||    
T  7840196 gcatcatcatgtagaccggttcattgtgatcccgctttcttctgacttttgaagctccacacttgatttaaaactcaaac 7840117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 43980639 - 43980705
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatat 307  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||| |||||||||    
T  43980639 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggaatatatatat 43980705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 29180391 - 29180331
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  29180391 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 29180331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 50768586 - 50768645
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  50768586 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 50768645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 38187707 - 38187645
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||| ||||||||||| ||| ||| |||||||||    
T  38187707 tagttttcttaataagtgtgaattagtgtttttagcttataaattaggacggagggagtatat 38187645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 9798054 - 9798010
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  9798054 tagttttcttaataaatgtgaattagtgttttttgcttataaatt 9798010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 10591482 - 10591422
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  10591482 tagttttcttaataagtgtgaattactgttttttgcttataaattaggacggagggagtat 10591422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 30776463 - 30776403
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| ||| ||| |||||||    
T  30776463 tagttttcttaataagtgtgaattagttttttttgcttataaattaggacggagggagtat 30776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 49902168 - 49902212
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  49902168 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 49902212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 29899856 - 29899915
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| ||| ||| ||||||    
T  29899856 tagttttcttaataaatgtgaattagtgttttttacttataaattaggacggagggagta 29899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 39969968 - 39969909
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||    
T  39969968 tagttttcttaataagtgtgaattactgttttttgcttataaattaggacggagggagta 39969909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 35462732 - 35462658
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatattatgataa 315  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  35462732 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatatttattacgataa 35462658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 31316814 - 31316755
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  31316814 tagttttcttaataactgtgaattagtgttttttgcttataaattaggacggagggagta 31316755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 8146026 - 8145967
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||    
T  8146026 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagta 8145967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 2002146 - 2002100
Alignment:
Q  243 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 289  Q
    ||||||||| ||| |||||||| ||||||||| ||||||||||||||    
T  2002146 gttttcttaataagtgtgaatttgtgtttttttcttataaattggga 2002100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 31690630 - 31690573
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    |||||||| ||| |||||||| || |||||||||||||||||  || |||||||||||    
T  31690630 ttttcttaataagtgtgaattagtattttttgcttataaattaagacggaaggagtat 31690573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 36037381 - 36037443
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||||||| ||| |||||||||    
T  36037381 tagttttcttaataagtgtgaatttgtgttttttgcttataaattgggacggagggagtatat 36037443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 40935629 - 40935568
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| ||||||||    
T  40935629 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggatggagggagtata 40935568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 40960490 - 40960430
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  40960490 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggaaggagtat 40960430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 23873843 - 23873783
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  23873843 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 23873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 44875323 - 44875367
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  44875323 tagttttcttagtaagtgtgaattagtgttttttgcttataaatt 44875367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 46949465 - 46949525
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  46949465 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtat 46949525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 26907107 - 26907048
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  26907107 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 26907048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 6848310 - 6848262
Alignment:
Q  257 tgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 305  Q
    |||||||| ||||||||| |||||||||| ||||||| |||||||||||    
T  6848310 tgtgaattagtgtttttttcttataaattaggatggagggagtatatat 6848262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 35941985 - 35942029
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  35941985 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 35942029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 18852371 - 18852430
Alignment:
Q  245 tttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 304  Q
    ||||||| ||| |||||||| |||||||||||||||||||| | | ||| ||||||||||    
T  18852371 tttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatata 18852430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 25990892 - 25990955
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 304  Q
    ||||||||||| ||| ||||| ||  ||||||||||||||||||| ||| ||| ||||||||||    
T  25990892 tagttttcttaataaatgtgatttaatgttttttgcttataaattaggacggagggagtatata 25990955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 39026262 - 39026199
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgtttttt-gcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||||||| ||| ||| |||||||||    
T  39026262 tagttttcttaataaatgtgaattagtgtttttttgcttataaattaggacggagggagtatat 39026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 31970320 - 31970266
Alignment:
Q  246 ttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    |||||| ||| |||||||| || ||||||||||||||||| ||| ||||||||||    
T  31970320 ttcttaataagtgtgaattagtattttttgcttataaattaggacggaaggagta 31970266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 28017800 - 28017861
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| |||  || ||||||||    
T  28017800 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacagagggagtata 28017861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 35189349 - 35189390
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  35189349 ttttcttaataaatgtgaattagtgttttttgcttataaatt 35189390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 36188977 - 36188920
Alignment:
Q  245 tttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  36188977 tttcttaataagtgtgaatttgtgttttttgcttataaattgggatggagggagtata 36188920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 21654390 - 21654452
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  21654390 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 21654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 53020328 - 53020390
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  53020328 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 53020390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 55400883 - 55400944
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  55400883 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 55400944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 26641087 - 26641027
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  26641087 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 26641027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 32322211 - 32322152
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  32322211 ttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtatat 32322152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 37324058 - 37323996
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| | | ||| |||||||||    
T  37324058 tagttttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatat 37323996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 51309561 - 51309618
Alignment:
Q  244 ttttcttagtaattgtgaattggtgtttt-ttgcttataaattgggatggaaggagta 300  Q
    |||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||||||||    
T  51309561 ttttcttaataaatgtgaatttgtgtttttttgcttataaattgggacggaaggagta 51309618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 31126357 - 31126401
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  31126357 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 31126401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 34022744 - 34022788
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  34022744 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 34022788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 46580680 - 46580724
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  46580680 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 46580724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 16739140 - 16739081
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||| ||||||||||| ||| ||| ||||||    
T  16739140 tagttttcttaataagtgtgaattagtgtttttggcttataaattaggacggagggagta 16739081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 45347688 - 45347625
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 304  Q
    ||||||||||| ||| | |||||| ||||||||| |||||||||| ||| || |||||||||||    
T  45347688 tagttttcttaataaatatgaattagtgttttttacttataaattaggacggtaggagtatata 45347625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 46296051 - 46295990
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| ||| |||||||| || |||||| |||||||||| ||| ||| ||||||||    
T  46296051 tagttttcttaataagtgtgaattagtattttttacttataaattaggacggagggagtata 46295990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 44411223 - 44411163
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  44411223 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggaaggagtat 44411163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 35260204 - 35260265
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  35260204 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 35260265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 27621277 - 27621336
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  27621277 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 27621336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 37598216 - 37598278
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  37598216 tagttttcttaataaccgtgaattagtgttttttgcttataaattaggacggagggagtatat 37598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 2238607 - 2238550
Alignment:
Q  243 gttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| || ||| ||||||    
T  2238607 gttttcttaataagtgtgaatttgtgttttttgcttataaattgagacggagggagta 2238550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 24510709 - 24510652
Alignment:
Q  243 gttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| ||||||    
T  24510709 gttttattaataagtgtgaatttatgttttttgcttataaattgggatggagggagta 24510652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 25321600 - 25321539
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  25321600 tagttttctaaataagtgtgaattagtgttttttgcttataaattaggacggagggagtata 25321539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 3100100 - 3100144
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  3100100 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 3100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 11044204 - 11044248
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  11044204 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 11044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 44052768 - 44052820
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatgga 293  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| |||||||    
T  44052768 tagttttcttaataagtgtgaattagtattttttgcttataaattaggatgga 44052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 27752733 - 27752776
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaat 284  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||    
T  27752733 tagttttcttaataagtgtgaattagtgttttttgcttataaat 27752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 37566511 - 37566453
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagt 299  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||    
T  37566511 tagtttttttaataagtgtgaattagtgttttttgcttataaattaggacggagggagt 37566453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 35832556 - 35832616
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| |||||||    
T  35832556 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggatggagggagtat 35832616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 15858701 - 15858639
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||||    
T  15858701 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtatat 15858639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 33635480 - 33635540
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  33635480 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 33635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 38071462 - 38071398
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 305  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||| ||||    
T  38071462 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtaaatat 38071398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 792368 - 792309
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  792368 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 792309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 21539901 - 21539960
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  21539901 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 21539960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 14565385 - 14565323
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||||    
T  14565385 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtatat 14565323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 43075893 - 43075955
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| || ||||||||||||||||| ||| ||| |||||||||    
T  43075893 tagttttcttaataagtgtgaattagtattttttgcttataaattaggacggagggagtatat 43075955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 10979313 - 10979374
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtata 302  Q
    ||||||||||| | | |||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  10979313 tagttttcttaatgagtgtgaattagtgttttttgcttataaattaggacggagggagtata 10979374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 10478322 - 10478382
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  10478322 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtat 10478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 38549655 - 38549611
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  38549655 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 38549611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 13822777 - 13822731
Alignment:
Q  243 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 289  Q
    ||||||||| ||| |||||||| || |||||||||||||||||||||    
T  13822777 gttttcttaataagtgtgaatttgtattttttgcttataaattggga 13822731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 4774 - 4834
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  4774 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 21654092 - 21654028
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatat 305  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| | | ||| |||||||||||    
T  21654092 tagttttcttaataagtgtgaattagtgttttttgcttataaattagaacggagggagtatatat 21654028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 32491078 - 32491026
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatgga 293  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| |||||||    
T  32491078 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggatgga 32491026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 43107876 - 43107816
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  43107876 tagttttcttaataaatgtgaattagtgttttttgcttataaattaggacggagggagtat 43107816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 35084072 - 35084009
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgtttttt-gcttataaattgggatggaaggagtatat 303  Q
    ||||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||| |||||||||    
T  35084072 tagttttcttattaagtgtgaatttgtgtttttttgcttataaattgggacggagggagtatat 35084009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 35181335 - 35181394
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  35181335 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 35181394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 18206287 - 18206231
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    |||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  18206287 ttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 18206231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 18800735 - 18800675
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatata 304  Q
    |||||||| ||| |||||||| || ||||||||||||||||||||| ||| | ||||||||    
T  18800735 ttttcttaataagtgtgaatttgtattttttgcttataaattgggacggatgaagtatata 18800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 19933026 - 19932982
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||    
T  19933026 tagttttcttaataagtgtgaattagtgttttttgcttataaatt 19932982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 47383549 - 47383609
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||  |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  47383549 tagttttcttaatatgtgtgaatttgtgttttttgcttataaattaggacggagggagtat 47383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 3157579 - 3157638
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| | |||||| |||||||||||||||||||| ||| ||| ||||||    
T  3157579 tagttttcttaataagtatgaattagtgttttttgcttataaattaggacggagggagta 3157638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 30082496 - 30082542
Alignment:
Q  243 gttttcttagtaattgtgaattggtgttttttgcttataaattggga 289  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  30082496 gttttcttaataagtgtgaatttgtgttttttgcctataaattggga 30082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 40593964 - 40594029
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtatatatattat 310  Q
    |||||||| ||| |||||||| || ||||||||||||||||| ||| ||| ||||||| ||||||||    
T  40593964 ttttcttaataaatgtgaatttgtattttttgcttataaattaggacggagggagtat-tatattat 40594029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 22111301 - 22111244
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgtt-ttttgcttataaattgggatggaagga 297  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||| ||| |||||||    
T  22111301 tagttttcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 22111244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 29236037 - 29235980
Alignment:
Q  244 ttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    |||||||| | | |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  29236037 ttttcttaatgagtgtgaatttgtgttttttgcttataaattaggacggagggagtat 29235980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 40583288 - 40583345
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgtt-ttttgcttataaattgggatggaagga 297  Q
    ||||||||||| ||| |||||||| ||||| ||||||||||||||| ||| |||||||    
T  40583288 tagttttcttaataagtgtgaattagtgttattttgcttataaattaggacggaagga 40583345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 10228056 - 10228116
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| |||||||    
T  10228056 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagtat 10228116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 5121469 - 5121410
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  5121469 tagttttcttaataagtgtgaattagtgttttttgcttataaattaggacggagggagta 5121410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 12278850 - 12278894
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaatt 285  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  12278850 tagttttcttaataagtgtgaattgatgttttttgcttataaatt 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 17721822 - 17721762
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| |||||||    
T  17721822 tagttttcttaataagtgtgaattaatgttttttgcttataaattaggacggagggagtat 17721762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 30949279 - 30949339
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagtat 301  Q
    ||||||| ||| ||| |||||||| || ||||||||||||||||| ||||||| |||||||    
T  30949279 tagttttgttaataagtgtgaattagtattttttgcttataaattaggatggagggagtat 30949339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 374243 - 374302
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgggatggaaggagta 300  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||| ||| ||| ||||||    
T  374243 tagtttttttaataaatgtgaattagtgttttttgcttataaattaggacggagggagta 374302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 21964101 - 21964147
Alignment:
Q  241 tagttttcttagtaattgtgaattggtgttttttgcttataaattgg 287  Q
    ||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  21964101 tagttttattagtaagtgtgaattggatttttttgcttataaattgg 21964147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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