View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967-Insertion-3 (Length: 810)
Name: NF5967-Insertion-3
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 8 - 810
Target Start/End: Original strand, 32557236 - 32558039
Alignment:
| Q |
8 |
aatatgtccataaacagtttacacattccacgacatgacaaatgaaaacaaaaatacagacaatctcacacnnnnnnnnncatataaattctctcaacca |
107 |
Q |
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| T |
32557236 |
aatatgtccacaaacagtttacacattccacgacatgacaaatgaaaacaaaaatacagacactctcacacaaaaaaa--catataaattctctcaacca |
32557333 |
T |
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| Q |
108 |
tgaaaatgaaagagtacataatttatctcagaagaaaaatgaagagctcccaaaatcaaaagtaccattcacagaacctgccataatattattctctgca |
207 |
Q |
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| T |
32557334 |
tgaaaatgaaagagtacataatttatctcagaagaaaaatgaagagctcccaaaatcaaaagtaccattcacagaacctgccataatattattctctgca |
32557433 |
T |
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| Q |
208 |
cctcccatatttgttcccaacatttgattattataacagtcttctgatgcattctgctcccatgatgaataaaaataaccatgatcgcctccgttgaata |
307 |
Q |
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| T |
32557434 |
cctcccatatttgttcccaacatttgattattataacaatcttctgatgcattctgctcccatgatgaataaaaataaccatgatcgcctccgttgaata |
32557533 |
T |
|
| Q |
308 |
ctgaatcacctggactataacaggcagagctagtaatatccggtggcaacggaggaagctcaacattgtcgttgttaaaataggaatttccattgttatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32557534 |
ctgaatcacctggactataacaggcagagctagtaatatccggtggcaacggaggaagctcaacattgtcgttgttaaaataggaatttccattattatt |
32557633 |
T |
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| Q |
408 |
aatgttattaatactagcctccaatgtatcaagaggaacttgatgaggaagactgtatttattgaaataattattatcatttccctcaccgtaaccgtaa |
507 |
Q |
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| T |
32557634 |
aatgttattaataccagcctccaatgtatcaagaggaacttgatgaggaagactgtatttattgaaataattattatcatttccctcaccgtaaccgtaa |
32557733 |
T |
|
| Q |
508 |
ctcccagaggaagttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaaccggttcaggttgaagaacaaaagaaaggtcgtaaa |
607 |
Q |
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| T |
32557734 |
ctcccagaggaagttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaacgggttcaggttgaagaacaaaagaaaggtcgtaaa |
32557833 |
T |
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| Q |
608 |
aactttgag---nnnnnnnnnnnnnnnnnnngtcgggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagc |
704 |
Q |
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| T |
32557834 |
aactttgaggttgttgttgttgttgttgttggtcaggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagc |
32557933 |
T |
|
| Q |
705 |
acgtgagccacgcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaagga |
804 |
Q |
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| T |
32557934 |
acgtgagccacgcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaagga |
32558033 |
T |
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| Q |
805 |
tcgcgt |
810 |
Q |
| |
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| T |
32558034 |
tcgcgt |
32558039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 730 - 806
Target Start/End: Original strand, 6507659 - 6507735
Alignment:
| Q |
730 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
806 |
Q |
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||||| || ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||| |||||| |
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| T |
6507659 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
6507735 |
T |
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