View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5967-Insertion-4 (Length: 700)
Name: NF5967-Insertion-4
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967-Insertion-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Complemental strand, 1499370 - 1498681
Alignment:
| Q |
7 |
caccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499370 |
caccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcctt |
1499271 |
T |
|
| Q |
107 |
ccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1499270 |
ccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgaagcaaaaatttggattatctttcaaaatctcttct |
1499171 |
T |
|
| Q |
207 |
gttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggc--ataagtacaacaatattttggcaataccaaagtc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1499170 |
gttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggcatataagtacaacaatattttggcaataccaaagtc |
1499071 |
T |
|
| Q |
305 |
caaagcttaatcacatcaaataaaaatagtcnnnnnnncttgagggaaaaataaaaatagtcttgcaatgcaatatttctctattgatatagtaggcaaa |
404 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1499070 |
caaagctaaatcacataaaataaaaatagtctttttttcttgagggaaaaataaaaatagtcttgtaatgcaatatttctctattgatatagtaggcaaa |
1498971 |
T |
|
| Q |
405 |
attaacgtcacaatgacttaaaaaataatgttatttgttatctgtattgtatttgttttcttatattatcaggtttgaggtnnnnnnnntatataaaatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1498970 |
attaacgtcacaatgacttaaaaaataatgttatttgttaactgtattgtatttgttttcttatattatcaggtttgaggt-aaaaaaatatataaaatg |
1498872 |
T |
|
| Q |
505 |
acaaatgaaatatttgaatgtgattgagtcacataaacaagtagaaatgtgggttaaacatttataattacacttcnnnnnnnncatttataatttacaa |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
1498871 |
acaaatgaaatatttgaatgtgattgagtcacataaacaagtagaaatgtgggataaacatttataattacacttcaaaaaaaacatttataa-ttacaa |
1498773 |
T |
|
| Q |
605 |
aaataatatgtatatataacaaaacctatgattaaatttagtacgtaatttaaatttcagattcacatttgtgaaattcaatttatttatttt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1498772 |
aaataatatgtatatataacaaaacctatgatt-aatttagtacgtaatttaaatttcagattcacatttgtgaaattcaatttatttatttt |
1498681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 1482323 - 1482046
Alignment:
| Q |
7 |
caccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcctt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||| |||||||| ||||| || ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
1482323 |
caccaggcatgtctacaccacttgtggtacaaaatattaagtgtgtaatctttgattttggttggccccattcttttatagccttcactgcagcctcctt |
1482224 |
T |
|
| Q |
107 |
ccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttct |
206 |
Q |
| |
|
||||||||||| | ||||||| ||| ||||||||||||||||||||| ||||||| | | | |||| | | | ||||| ||||||||||||||||| |
|
|
| T |
1482223 |
tcctagtctaggcacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcgcatacactaggattttctttcaaaatctcttca |
1482124 |
T |
|
| Q |
207 |
gttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggcataagtacaacaat |
284 |
Q |
| |
|
|| | |||| | |||| || | |||||||||||||||||| ||| |||||||||||||| ||| |||| |||||| |
|
|
| T |
1482123 |
gtaagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataaagaaatatcattagtagaacaat |
1482046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 1505105 - 1504861
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| || ||||| |||||||| || ||||||||||||| ||||| || || ||||||||||| | |
|
|
| T |
1505105 |
ccaggcatgtctacaccacttgtggtgcaaacaattaagtgagtaatctttgactttggctgaccccattcttttatagcttttacggcagcctcctttc |
1505006 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| | | | | |||| | | ||||| ||||| |||||||| ||||| |
|
|
| T |
1505005 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactgggattctcttttaaaatctcctctgt |
1504906 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaagg |
253 |
Q |
| |
|
|| ||||| | ||| || |||||||||||||||||||| |||| |
|
|
| T |
1504905 |
taggtacatgtatcttctcttaatcatagatttatcacctgaagg |
1504861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 1492296 - 1492143
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1492296 |
ccaggcatgtctacaccgcttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttcc |
1492197 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtg |
162 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
1492196 |
ctagtctaggtacttctaccaccaccatgtcttgtctagcatccaatgaaggtg |
1492143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 1486800 - 1486505
Alignment:
| Q |
7 |
caccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcctt |
106 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| ||||| |||||||| |||||||| ||||| ||| |||||| ||||| |||||||||||||| || |
|
|
| T |
1486800 |
caccaggcatgcctataccactcatggtgcaaaatattaagtgtgtaatctttgactttggttggccctattcttttatagctttcactgcagcctcatt |
1486701 |
T |
|
| Q |
107 |
ccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttct |
206 |
Q |
| |
|
||||| ||||| | ||| | ||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
1486700 |
tcctagcctaggcacgtctcgcaccaccatgtcttgcctagcatccaaagaaggtgtcatataagtgcaaaaattaggattctctttcaaaatagcttct |
1486601 |
T |
|
| Q |
207 |
gttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggcataagtacaacaatat-tttggcaataccaaa |
301 |
Q |
| |
|
||| ||||| | ||| || | ||||| ||||| |||||||||| | ||||||| || || ||| |||| ||||| || ||||||||||||||| |
|
|
| T |
1486600 |
gtttggtacatgtatcttctcttgatcattgatttttcacctaaagtaattataaataattgacattagtataacaaaatctttggcaataccaaa |
1486505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 1478127 - 1477982
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || || |||||||| ||||| || ||||| |||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
1478127 |
ccaggcatgtctacaccacttgtggtgcaaaagatcaagtgtgtaatctttgattttggttggccccattcttttatagctttcactgcagcctcctttc |
1478028 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaa |
154 |
Q |
| |
|
|||||||||||| |||||| ||| |||||| |||||||||||||| |
|
|
| T |
1478027 |
ctagtctaggtacttctaccaccaccatgtcctgcctagcatccaa |
1477982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 1509229 - 1509053
Alignment:
| Q |
32 |
ggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttccctagtctaggtatctctaccgcc |
131 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || || || |||||||||| ||||||||||||||| |||| || ||||| ||||||| || ||| || |
|
|
| T |
1509229 |
ggtgcaaaagattaaatgtgtaatctttgattttggctggccccattcttttatagccttcactgcaacctcttttcctagcctaggtacctttacaacc |
1509130 |
T |
|
| Q |
132 |
atcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
| ||||||||||||||||||||| || |||| | ||| | |||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
1509129 |
accatgtcttgcctagcatccaatgatggtgccgtataagcacaaacattgggattctctttcaaaatctcttctgt |
1509053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 5315239 - 5314976
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5315239 |
ccaggcatgtcaacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttcc |
5315140 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | | | | | |||| | | ||||| ||||||||||| |||||||| |
|
|
| T |
5315139 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgt |
5315040 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggcat |
272 |
Q |
| |
|
|| |||| | |||| || | |||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
5315039 |
tagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataatgaaatggcat |
5314976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 46706982 - 46707226
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46706982 |
ccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttcactgcagcctccttcc |
46707081 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | ||| | |||| | | ||||| |||||||||||||| | ||| |
|
|
| T |
46707082 |
ctagtctaggtacctctaccaccaccatgtcttgcctggcatccaatgaaggtgccatatattcacaaacactgggattctctttcaaaatctcctatgt |
46707181 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaagg |
253 |
Q |
| |
|
|| ||||| | |||| || | |||||||||||||||||| |||| |
|
|
| T |
46707182 |
taggtacatgtatctcctcttgatcatagatttatcacctgaagg |
46707226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 5289691 - 5289943
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
5289691 |
ccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttc |
5289790 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | | | | | |||| | ||||||| ||||||||||| |||||||| |
|
|
| T |
5289791 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacacttggattttctttcaaaatttcttctgt |
5289890 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataa |
261 |
Q |
| |
|
|| |||| | |||| || | ||||| |||||||||||| ||| |||||||| |
|
|
| T |
5289891 |
tagatacatgtatctcctcttgatcatggatttatcacctgaagtagttataa |
5289943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 5310525 - 5310266
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
5310525 |
ccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttc |
5310426 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | | | | |||| | | ||||| |||||||||||||| ||||| |
|
|
| T |
5310425 |
ctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaaggtgccatgtattcacaaacactaggattttctttcaaaatctcctctgt |
5310326 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatg |
268 |
Q |
| |
|
|| |||| | |||| || | |||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
5310325 |
tagatacatgtatctcctcttgatcatagatttatcacctgaagtggttataatgaaatg |
5310266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 5302621 - 5302372
Alignment:
| Q |
12 |
ggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcccta |
111 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
5302621 |
ggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgcagcctcctttccta |
5302522 |
T |
|
| Q |
112 |
gtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgttaa |
211 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||||||||| ||||| | | | | | |||| | | ||||| ||||||||||| |||||||||| |
|
|
| T |
5302521 |
gtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggggccatgtattcacaaacactaggattttctttcaaaatttcttctgttag |
5302422 |
T |
|
| Q |
212 |
gtacacatgtctcttcctaatcatagatttatcacctaaaggagttataa |
261 |
Q |
| |
|
|||| | |||| || | ||||| |||||||||||| ||| |||||||| |
|
|
| T |
5302421 |
atacatgtatctcctcttgatcatggatttatcacctgaagtagttataa |
5302372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 5284436 - 5284184
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| | |
|
|
| T |
5284436 |
ccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttggccccattcttttatagccttcactgcagcctcctttc |
5284337 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||| |||||||| ||||| | | | | | |||| | | ||||| | ||||||||| |||||||| |
|
|
| T |
5284336 |
ctagtctaggtacctctaccaccaccatgtcttgccttgcatccaatgaaggggccatgtattcacaaacactaggattttttttcaaaatttcttctgt |
5284237 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataa |
261 |
Q |
| |
|
|| |||| | |||| || | |||||||||||||||||| ||| |||||||| |
|
|
| T |
5284236 |
tagatacatgtatctcctcttgatcatagatttatcacctgaagtagttataa |
5284184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 44128702 - 44128458
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||| |||||||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
44128702 |
ccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttcc |
44128603 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| | | | | |||| | | ||||| |||||||||||||| ||||| |
|
|
| T |
44128602 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgt |
44128503 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaagg |
253 |
Q |
| |
|
|| ||||| || |||| || | |||||||||||||||||| |||| |
|
|
| T |
44128502 |
taggtacatatatctcctcttgatcatagatttatcacctgaagg |
44128458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 44132907 - 44132663
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||| |||||||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
44132907 |
ccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttcc |
44132808 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| | | | | |||| | | ||||| |||||||||||||| ||||| |
|
|
| T |
44132807 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgt |
44132708 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaagg |
253 |
Q |
| |
|
|| ||||| || |||| || | |||||||||||||||||| |||| |
|
|
| T |
44132707 |
taggtacatatatctcctcttgatcatagatttatcacctgaagg |
44132663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 44141329 - 44141085
Alignment:
| Q |
9 |
ccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctccttcc |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||| |||||||| |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
44141329 |
ccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgcagcctccttcc |
44141230 |
T |
|
| Q |
109 |
ctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttctgt |
208 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| | | | | |||| | | ||||| |||||||||||||| ||||| |
|
|
| T |
44141229 |
ctagtctaggtacctctaccaccaccatgtcttgcctagcatccaatgaaggtgccatgtattcacaaacactaggattctctttcaaaatctcctctgt |
44141130 |
T |
|
| Q |
209 |
taagtacacatgtctcttcctaatcatagatttatcacctaaagg |
253 |
Q |
| |
|
|| ||||| || |||| || | |||||||||||||||||| |||| |
|
|
| T |
44141129 |
taggtacatatatctcctcttgatcatagatttatcacctgaagg |
44141085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 24163782 - 24164055
Alignment:
| Q |
7 |
caccaggcatgtctacaccact-ataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcct |
105 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| ||||| ||||| || |||||||| ||||| |||||||||| ||||||||||| || ||||||| |
|
|
| T |
24163782 |
caccaggcatatctacaccacttatag-tgcaaaatattaagtgtgtgatctttgactttggttggccccattcttttatagccttcacggctgcctcct |
24163880 |
T |
|
| Q |
106 |
tccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttc |
205 |
Q |
| |
|
| |||||||| ||| |||||| ||| |||||||||||||| |||||||||||||| | ||| ||| || || ||||| ||||||||||||||||| |
|
|
| T |
24163881 |
ttcctagtcttggtgcctctactaccaccatgtcttgcctagtatccaaagaaggtgccatataagtgcacaagttaggattctctttcaaaatctcttc |
24163980 |
T |
|
| Q |
206 |
tgttaagtacacatgtctcttcctaatcatagatttatcacctaaaggagttataaagaaatggcataagtacaa |
280 |
Q |
| |
|
|||| ||||| | |||| || | ||||||| ||||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
24163981 |
ggttaggtacatgtatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgacgtaagtacaa |
24164055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 37863382 - 37863623
Alignment:
| Q |
7 |
caccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgcagcctcctt |
106 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| ||| ||||| |||||||| |||||||||||||| | ||||||||| ||||||||| || |
|
|
| T |
37863382 |
caccaggcatatccacaccacttgtggtgcaaaaaattagatgagtaatctttgacttaggttgaccccattccttgatagcctttgttgcagcctcttt |
37863481 |
T |
|
| Q |
107 |
ccctagtctaggtatctctaccgccatcatgtcttgcctagcatccaaagaaggtgtcttatcgacgcaaaaatttggattatctttcaaaatctcttct |
206 |
Q |
| |
|
||||| | |||| || || ||| ||| || || || |||||||| ||||||| | ||| | || ||| | ||||| || |||||||||||||| |
|
|
| T |
37863482 |
tcctagctttggtacttccacaaccaccatatcctgtcttgcatccaacgaaggtgccatatactcacataaactaggattctccttcaaaatctcttca |
37863581 |
T |
|
| Q |
207 |
gttaagtacacatgtctcttcctaatcatagatttatcacct |
248 |
Q |
| |
|
|| || | || | ||||||| |||||||||||||||||||| |
|
|
| T |
37863582 |
gtcaaatgcatgtatctcttcttaatcatagatttatcacct |
37863623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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