View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967-Insertion-6 (Length: 365)
Name: NF5967-Insertion-6
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 12529296 - 12528940
Alignment:
| Q |
9 |
catgtccactattctgacccaagattgctctatcttcctcggatcctgctgttgtcattgttcggtgcttctgttgctgaagttcatccagttgtgacag |
108 |
Q |
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||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||| ||| || ||||| ||||||||| ||||| ||| |||| |
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| T |
12529296 |
catgtccactattctgacccaggattactctatcttccttggatccggctgttgttattgtttggttctgctgttactgaagttcgtccagctgtaacag |
12529197 |
T |
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| Q |
109 |
atcaatgttatcctttatatattattctaattgttatgttttatgttttgttgttacctttgaaaaaacatattatatacatcaccattttaattttgca |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12529196 |
atcactgttatcctttatatattattctaattgttatgttttatgttttgttgttacctttgagaaaacatattatatacatcaccattttaattttgca |
12529097 |
T |
|
| Q |
209 |
gatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12529096 |
gatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaatgacaaac |
12528997 |
T |
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| Q |
309 |
cgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatat |
365 |
Q |
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| T |
12528996 |
cgaagatccttgtgaactacaatgggaaggaacatcactttgttgctgaagaaatat |
12528940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 202 - 365
Target Start/End: Complemental strand, 8546231 - 8546068
Alignment:
| Q |
202 |
ttttgcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaat |
301 |
Q |
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|||||||||||||||||||||||||||||| || |||||||| ||| | ||||||||||| | ||||||||||||||||||||||| | | |||| |||| |
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| T |
8546231 |
ttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaat |
8546132 |
T |
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| Q |
302 |
gacaaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatat |
365 |
Q |
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||||||||||| || |||||||||||||| ||| ||||| | |||||||||||||||||||||| |
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| T |
8546131 |
gacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatat |
8546068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 365
Target Start/End: Complemental strand, 8576943 - 8576762
Alignment:
| Q |
185 |
atacatcaccattttaattttg-cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaag |
283 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||||||||||||||||| || |||||||| ||||| |||||||| || || ||||||||||||||| |
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| T |
8576943 |
atacatcaccatgttaatttttacagatacaaagaggttaattggaaggaaatatagtgattccattgttcagaaggattgtcttttgtggccctttaag |
8576844 |
T |
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| Q |
284 |
gtcactgctggtgctaatgacaaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatat |
365 |
Q |
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| T |
8576843 |
gtcattgccggtactaatgacaaaccgacaatcgttgtgaactacaaaggtgaggaaaaacgctttgttgctgaagaaatat |
8576762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 365
Target Start/End: Complemental strand, 8582313 - 8582136
Alignment:
| Q |
189 |
atcaccattttaattttg-cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtca |
287 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| ||||| || || |||||||||||| ||||||| |
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| T |
8582313 |
atcaccattttaattttttcagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtca |
8582214 |
T |
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| Q |
288 |
ctgctggtgctaatgacaaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatat |
365 |
Q |
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| || |||||||||||||||||||| ||| ||||||||||||| ||||||||| | |||||| ||||||||||||||| |
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| T |
8582213 |
ccgcaggtgctaatgacaaaccgacaatcgttgtgaactacaagggtaaggaaaaacactttcttgctgaagaaatat |
8582136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 8559977 - 8559769
Alignment:
| Q |
159 |
ttgttacctttgaaaaa-acatattatatacatcaccattttaatttt-gcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcag |
256 |
Q |
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||||||| ||||||||| | ||| || || ||| |||||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||| || |
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| T |
8559977 |
ttgttacatttgaaaaacaaataatacatgcatgaccattttaatttttgcagatgcaaagaggttaattggaaggaaatacagtgattccatagtccaa |
8559878 |
T |
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| Q |
257 |
aatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctg |
356 |
Q |
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| ||| ||||||||||||||||||||||| ||||| | |||||||||||| ||| |||||||||| |||| || |||||| | || ||||||| | |
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| T |
8559877 |
agtgatgtactgttgtggccctttaaggtcatcgctggcgataatgacaaaccaacggtccttgtgaaatacaggggcaaggaaaagcatcttgttgccg |
8559778 |
T |
|
| Q |
357 |
aagaaatat |
365 |
Q |
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||||||||| |
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| T |
8559777 |
aagaaatat |
8559769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 8570925 - 8570747
Alignment:
| Q |
188 |
catcaccattttaatttt-gcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtc |
286 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||| ||||||| || | ||| |||||||||||||||||| |
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| T |
8570925 |
catcactattttaatttttgcagatgtaaagaggttaattggaaggaagtatagtgattccatcgttcagatggatcgacttttgtggccctttaaggtc |
8570826 |
T |
|
| Q |
287 |
actgctggtgctaatgacaaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatat |
365 |
Q |
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| | |||||||| ||||||| || ||| ||||||| |||| ||||||||| | | ||||| ||||||||||||| |
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| T |
8570825 |
atctccggtgctaacaacaaaccaacaatcattgtgaagtacatgggtaaggaaaaacgttttgtagctgaagaaatat |
8570747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 29581394 - 29581451
Alignment:
| Q |
186 |
tacatcaccattttaattttgcagatgcaaagaggttaattggaagaaagtatagtga |
243 |
Q |
| |
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||||||| ||||||| || ||||||||||||||||||||| |||||||| |||||||| |
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| T |
29581394 |
tacatcaacattttatttatgcagatgcaaagaggttaatcggaagaaaatatagtga |
29581451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 8538632 - 8538528
Alignment:
| Q |
205 |
tgcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgac |
304 |
Q |
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||||||||| |||||||| |||||||||| |||||||| || | |||||||||| ||||||||||||||| ||||| | ||||| ||||||||| |
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| T |
8538632 |
tgcagatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggtaaatgctgatgctaatgat |
8538533 |
T |
|
| Q |
305 |
aaacc |
309 |
Q |
| |
|
||||| |
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| T |
8538532 |
aaacc |
8538528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 8567301 - 8567245
Alignment:
| Q |
188 |
catcaccattttaatttt-gcagatgcaaagaggttaattggaagaaagtatagtga |
243 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
8567301 |
catcactattttaatttttgcagatgcaaagaggttaactggaagaaaatatagtga |
8567245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 8602568 - 8602490
Alignment:
| Q |
207 |
cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggt |
285 |
Q |
| |
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||||||||||||||||||||||||| || |||||||| || | |||||||||| || ||||||||| |||||||| |
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| T |
8602568 |
cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggt |
8602490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 315
Target Start/End: Original strand, 16661566 - 16661674
Alignment:
| Q |
207 |
cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa |
306 |
Q |
| |
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||||||| |||||||||||||| || || | ||||||| || | ||||| || || |||||||||||| || ||||| | |||||||| ||||||||| |
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| T |
16661566 |
cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa |
16661665 |
T |
|
| Q |
307 |
accgacgat |
315 |
Q |
| |
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||| ||||| |
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| T |
16661666 |
acctacgat |
16661674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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