View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967-Insertion-8 (Length: 153)
Name: NF5967-Insertion-8
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 43530423 - 43530279
Alignment:
| Q |
9 |
tagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatg |
108 |
Q |
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| T |
43530423 |
tagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatg |
43530324 |
T |
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| Q |
109 |
atgaaggtagctaagcccttctgccacatcaacaagaatcctacg |
153 |
Q |
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| T |
43530323 |
atgaaggtagctaagcccttctgccacatcaacaagaatcctacg |
43530279 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 51820949 - 51820988
Alignment:
| Q |
48 |
catccaacaaaatgttactagatttaatatccctatgaat |
87 |
Q |
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| T |
51820949 |
catctaacaaaatgttactagatttaacatccctatgaat |
51820988 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 22912719 - 22912807
Alignment:
| Q |
14 |
aaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtccca |
102 |
Q |
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| T |
22912719 |
aaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctctatgaataacaacttgttccca |
22912807 |
T |
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