View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5967_high_11 (Length: 247)

Name: NF5967_high_11
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5967_high_11
NF5967_high_11
[»] chr1 (27 HSPs)
chr1 (16-174)||(49687262-49687420)
chr1 (18-135)||(39462258-39462375)
chr1 (18-122)||(13214834-13214938)
chr1 (18-133)||(38925881-38925996)
chr1 (45-136)||(47451404-47451495)
chr1 (36-135)||(3580060-3580159)
chr1 (45-135)||(15823286-15823376)
chr1 (18-135)||(10400252-10400369)
chr1 (18-135)||(28842233-28842350)
chr1 (44-136)||(28840417-28840509)
chr1 (16-135)||(6822775-6822895)
chr1 (16-99)||(14098370-14098453)
chr1 (170-247)||(49691406-49691483)
chr1 (22-78)||(41646717-41646773)
chr1 (18-135)||(13761577-13761694)
chr1 (18-135)||(51752104-51752222)
chr1 (71-135)||(14098446-14098510)
chr1 (170-247)||(49680387-49680464)
chr1 (18-78)||(28207490-28207550)
chr1 (36-135)||(30790836-30790935)
chr1 (18-135)||(47177078-47177194)
chr1 (18-136)||(51749777-51749896)
chr1 (71-135)||(47179428-47179492)
chr1 (36-135)||(20302198-20302298)
chr1 (93-135)||(41646681-41646723)
chr1 (93-130)||(28207544-28207581)
chr1 (99-135)||(28201911-28201947)
[»] chr5 (22 HSPs)
chr5 (19-135)||(12556325-12556441)
chr5 (18-135)||(20504335-20504452)
chr5 (18-135)||(2818729-2818847)
chr5 (18-135)||(20507884-20508001)
chr5 (18-135)||(21947770-21947887)
chr5 (16-135)||(659713-659831)
chr5 (16-135)||(36402726-36402845)
chr5 (16-133)||(6756257-6756374)
chr5 (37-135)||(18186489-18186587)
chr5 (36-135)||(31466397-31466496)
chr5 (76-137)||(661227-661288)
chr5 (36-131)||(4236374-4236469)
chr5 (18-136)||(38881844-38881962)
chr5 (16-135)||(34479853-34479972)
chr5 (16-135)||(25921872-25921992)
chr5 (45-135)||(16775897-16775987)
chr5 (16-135)||(2174680-2174799)
chr5 (71-135)||(21684905-21684969)
chr5 (18-135)||(34477515-34477632)
chr5 (71-135)||(31544798-31544862)
chr5 (71-136)||(31542441-31542506)
chr5 (19-80)||(659869-659929)
[»] chr2 (11 HSPs)
chr2 (18-135)||(40032469-40032586)
chr2 (18-132)||(6259237-6259351)
chr2 (36-135)||(21521135-21521234)
chr2 (16-130)||(6264544-6264658)
chr2 (16-135)||(43623966-43624085)
chr2 (36-135)||(18800720-18800819)
chr2 (18-135)||(42064231-42064348)
chr2 (41-135)||(22407854-22407948)
chr2 (18-135)||(24162634-24162752)
chr2 (18-135)||(19502433-19502550)
chr2 (91-135)||(35107018-35107062)
[»] chr4 (28 HSPs)
chr4 (18-135)||(48486113-48486230)
chr4 (18-135)||(619869-619986)
chr4 (18-130)||(52942890-52943002)
chr4 (18-135)||(36920009-36920125)
chr4 (18-135)||(36921917-36922033)
chr4 (18-82)||(24878836-24878900)
chr4 (36-135)||(31850039-31850138)
chr4 (36-135)||(3825013-3825112)
chr4 (36-135)||(5637908-5638006)
chr4 (18-81)||(24880299-24880362)
chr4 (16-137)||(11434767-11434889)
chr4 (36-136)||(7941132-7941233)
chr4 (16-102)||(22801260-22801346)
chr4 (36-102)||(22803173-22803239)
chr4 (50-133)||(40091869-40091952)
chr4 (18-135)||(9148054-9148171)
chr4 (18-135)||(11006663-11006781)
chr4 (45-132)||(5198217-5198304)
chr4 (18-136)||(24888589-24888707)
chr4 (71-135)||(16932296-16932360)
chr4 (71-135)||(9174621-9174684)
chr4 (44-135)||(18846923-18847016)
chr4 (87-134)||(47274522-47274569)
chr4 (36-133)||(51015042-51015139)
chr4 (18-135)||(22044811-22044930)
chr4 (71-135)||(16934650-16934714)
chr4 (71-135)||(22780888-22780952)
chr4 (71-135)||(22783253-22783317)
[»] chr3 (22 HSPs)
chr3 (16-135)||(48362067-48362186)
chr3 (18-135)||(32264463-32264580)
chr3 (16-135)||(32218836-32218955)
chr3 (18-135)||(18099590-18099707)
chr3 (44-135)||(18097331-18097422)
chr3 (18-135)||(26720268-26720385)
chr3 (44-135)||(5523061-5523152)
chr3 (36-135)||(24176999-24177098)
chr3 (18-134)||(5191374-5191490)
chr3 (18-135)||(10956447-10956563)
chr3 (36-136)||(11162890-11162990)
chr3 (36-135)||(22114743-22114842)
chr3 (45-137)||(1321159-1321251)
chr3 (52-135)||(7606881-7606963)
chr3 (18-102)||(10085493-10085576)
chr3 (36-135)||(11170145-11170244)
chr3 (17-69)||(24979514-24979566)
chr3 (71-135)||(38210067-38210131)
chr3 (71-135)||(50493676-50493740)
chr3 (71-135)||(53896690-53896754)
chr3 (68-135)||(6063939-6064006)
chr3 (18-102)||(10192413-10192496)
[»] chr6 (12 HSPs)
chr6 (17-135)||(1072277-1072395)
chr6 (18-135)||(8995255-8995372)
chr6 (18-135)||(9019702-9019819)
chr6 (45-135)||(15530571-15530661)
chr6 (16-135)||(32279794-32279912)
chr6 (52-136)||(14507634-14507717)
chr6 (18-135)||(19227831-19227948)
chr6 (71-135)||(26066547-26066611)
chr6 (18-78)||(4816689-4816749)
chr6 (87-135)||(15541631-15541679)
chr6 (87-135)||(24191620-24191668)
chr6 (87-135)||(24192717-24192765)
[»] chr7 (13 HSPs)
chr7 (18-135)||(18567363-18567480)
chr7 (18-135)||(31435469-31435586)
chr7 (18-135)||(27306651-27306767)
chr7 (16-135)||(26804345-26804464)
chr7 (44-135)||(1049722-1049813)
chr7 (18-136)||(3878321-3878439)
chr7 (18-135)||(35379-35496)
chr7 (18-135)||(25542281-25542397)
chr7 (36-135)||(44314-44413)
chr7 (16-136)||(40837142-40837262)
chr7 (71-135)||(1047439-1047503)
chr7 (87-135)||(22392292-22392340)
chr7 (97-135)||(42006316-42006354)
[»] chr8 (12 HSPs)
chr8 (16-135)||(4423835-4423954)
chr8 (36-135)||(15067777-15067876)
chr8 (45-135)||(12517475-12517565)
chr8 (39-135)||(15072506-15072602)
chr8 (18-136)||(28252009-28252127)
chr8 (18-135)||(44720617-44720735)
chr8 (18-131)||(14807552-14807665)
chr8 (18-135)||(27829093-27829210)
chr8 (71-135)||(27826782-27826846)
chr8 (18-135)||(18812668-18812785)
chr8 (71-136)||(18810482-18810547)
chr8 (36-102)||(3886340-3886407)
[»] scaffold0131 (1 HSPs)
scaffold0131 (18-134)||(14768-14885)
[»] scaffold0250 (1 HSPs)
scaffold0250 (18-135)||(2629-2746)
[»] scaffold0025 (2 HSPs)
scaffold0025 (36-131)||(73445-73540)
scaffold0025 (36-131)||(69734-69829)
[»] scaffold0068 (1 HSPs)
scaffold0068 (71-135)||(28941-29005)
[»] scaffold0339 (1 HSPs)
scaffold0339 (87-134)||(3747-3794)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 49687420 - 49687262
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49687420 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 49687321  T
Q  116 attttaagttaactctcacagagtatatgtgcatacatcagttatgtttggaagcacaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49687320 attttaagttaactctcacagagtatatgtgcatacatcagttatgtttggaagcacaa 49687262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 39462375 - 39462258
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||| ||||  || |||||||||| || ||||||||    
T  39462375 ccatcgtgccacgaaaaatccactgacttgcctcaaaactgaaacctctaatcgtgccacgttgcccaaccattgtgtcacgatttctgcagaacctgat 39462276  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  39462275 tttaagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 13214938 - 13214834
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||| | |||||||||||    
T  13214938 ccatcatgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccaaccatcgtgccacgatttttgcataacctgat 13214839  T
Q  118 tttaa 122  Q
    |||||    
T  13214838 tttaa 13214834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 38925881 - 38925996
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||| | ||||||||||| |  ||||||||    
T  38925881 ccatcgtgccacaaaaaatccagtaacttgtctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgcggaacctgat 38925980  T
Q  118 tttaagttaactctca 133  Q
    ||||||||||||||||    
T  38925981 tttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 47451495 - 47451404
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcacag 136  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||    
T  47451495 ttgcctcaaaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgcaaaatctgatttgaagttaactctcacag 47451404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 3580060 - 3580159
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||| |||||||||||| ||||||||| | |||||||| |||||||||| || ||| |||||||||| || |||||||||||||||||||||||| ||||    
T  3580060 tccaatgacttgcctcataactgaaacatccaattgtgtcacgttgccctgcaatcgtgccacgattcctgcataacctgattttaagttaactcccaca 3580159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 15823376 - 15823286
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||  |||||||| |||| ||||||||||||||||||||| |||||||||| || || | ||||||||||||||||||||||||    
T  15823376 ttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15823286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 10400252 - 10400369
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||| |  |||||||  ||||||||||  |||||||| |||| ||||||||||||||||| ||| |||||||||| |     ||||||||    
T  10400252 ccatcgtgccacgatatttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgat 10400351  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  10400352 tttaagttaactctcaca 10400369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 28842350 - 28842233
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||  ||||||| ||||||||||||| |||| ||||||||| |||  |||||| |||||||||| ||||| | ||||||    
T  28842350 ccatcgtgccacgatttttccagtaccttgcctaaaaactgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacagatcctgat 28842251  T
Q  118 tttaagttaactctcaca 135  Q
    |||||||||||| |||||    
T  28842250 tttaagttaactttcaca 28842233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 28840509 - 28840417
Alignment:
Q  44 cttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcacag 136  Q
    ||||||| ||||||||||||| |||| |||||||||||||  |||||| |||||||||| || || | |||||||||||||||||| ||||||    
T  28840509 cttgcctaaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactttcacag 28840417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 6822895 - 6822775
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taac 112  Q
    ||||||||||||||||    ||||||| ||||||||||||  ||||||||| || | ||||||||||||||||||||| |||||||| |||| ||  |||    
T  6822895 caccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaac 6822798  T
Q  113 ctgattttaagttaactctcaca 135  Q
    |||||||||||||||||||||||    
T  6822797 ctgattttaagttaactctcaca 6822775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 14098370 - 14098453
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacg 99  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||| |||||||| ||| || ||||| |||||||    
T  14098370 caccatcgtgcaacgaaaaatccagtgacttgcgtcaaagctgaaacctccaatcgtgccacggtgctcaaccatcgtgccacg 14098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 49691483 - 49691406
Alignment:
Q  170 cacaaactagttatgtgaaacattaaaatatgtacatcacctaaaaccactcctagcttccaagttgaacttctaccc 247  Q
    |||||||||||||| |  ||||||||| ||||||||||||||||||||| ||||||||||| || || ||||||||||    
T  49691483 cacaaactagttatattgaacattaaagtatgtacatcacctaaaaccaatcctagcttccgagctggacttctaccc 49691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 41646773 - 41646717
Alignment:
Q  22 cgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  41646773 cgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctctaatcgtgccacg 41646717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 13761694 - 13761577
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctg 115  Q
    ||||||||||||||    ||||||| |||||||||||| ||||||||| || |  |||||||||||||||||||| |||||||| |||| ||  ||||||    
T  13761694 ccatcgtgccacgatttttccagtgccttgcctcaaaaactgaaacctcca-tcatgccacgttgcccagccatcgtgccacga-ttctgcagaaacctg 13761597  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  13761596 attttaagttaactctcaca 13761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 51752222 - 51752104
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cct 114  Q
    ||||||||||||||    ||||||| ||||||||||||  ||||||||| || | ||||||||||||||| ||||| |||||||||| || || || |||    
T  51752222 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccaaccatcgtgccacgatt-ctgcagaaacct 51752125  T
Q  115 gattttaagttaactctcaca 135  Q
    |||||||||||||||||||||    
T  51752124 gattttaagttaactctcaca 51752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 14098446 - 14098510
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||||||| ||| |||||||| ||||||||||||| || || |||||||||||||||||||||||    
T  14098446 gtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcaca 14098510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 49680464 - 49680387
Alignment:
Q  170 cacaaactagttatgtgaaacattaaaatatgtacatcacctaaaaccactcctagcttccaagttgaacttctaccc 247  Q
    |||||||||||| | |  || |||||| | ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  49680464 cacaaactagttgtattgaatattaaagtttgtacatcacctaaaaccaatattagcttccaagttgaacttctaccc 49680387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 28207490 - 28207550
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacg 78  Q
    ||||||||||| |||||||||| ||||||||||||||  |||||||| |||| ||||||||    
T  28207490 ccatcgtgccatgaaaaatccaatgacttgcctcaaagttgaaacctccaatcgtgccacg 28207550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 30790836 - 30790935
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||| ||| ||||||||| | |||| ||||||| |||| | || | | || |||||||||| || |||||| |||||||||| ||||||||    
T  30790836 tccagtgacttgcttcataactgaaacatccaatcgtgccacattgctctgcaaacgtgtcacgatttctccagaacctggttttaagttagctctcaca 30790935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 47177194 - 47177078
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctga 116  Q
    ||||||||||||||    ||||||| ||||||  |||||| |||||| || | |||||||||||||||| | || |||||||||| || || || |||||    
T  47177194 ccatcgtgccacgatttttccagtgtcttgcccaaaaactaaaacctcca-tcgtgccacgttgcccagtcgtcgtgccacgatt-ctgcagaaacctga 47177097  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  47177096 ttttaagttaactctcaca 47177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 51749896 - 51749777
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacct- 114  Q
    ||||||||||||||    ||||||| ||||||||||||  ||||||||| || | || |||||||||||| ||||| |||||||||| || || || ||     
T  51749896 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcca-tcgtaccacgttgcccaaccatcgtgccacgatt-ctgcagaaactt 51749799  T
Q  115 gattttaagttaactctcacag 136  Q
    ||||||||||||||||||||||    
T  51749798 gattttaagttaactctcacag 51749777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 47179492 - 47179428
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||||||||||||||| || |||||||||| || || || ||||||||||||||||||||||||    
T  47179492 gtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 47179428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 20302298 - 20302198
Alignment:
Q  36 tccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctgattttaagttaactctc 132  Q
    ||||||| ||||||||||||  ||||||||| || | |||||||||||||  ||||||||||| ||||| || || ||  ||||||||||||||||||||    
T  20302298 tccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgccttgccatcatgccgcgatt-ctgcagaaatctgattttaagttaactctc 20302201  T
Q  133 aca 135  Q
    |||    
T  20302200 aca 20302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 41646723 - 41646681
Alignment:
Q  93 tgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||| || ||| ||||||||||||||||||||||    
T  41646723 tgccacgatttctgcagaacatgattttaagttaactctcaca 41646681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 28207544 - 28207581
Alignment:
Q  93 tgccacgatttctacataacctgattttaagttaactc 130  Q
    ||||||||||||| || |||||||||||||||||||||    
T  28207544 tgccacgatttctgcagaacctgattttaagttaactc 28207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 28201911 - 28201947
Alignment:
Q  99 gatttctacataacctgattttaagttaactctcaca 135  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  28201911 gatttctacagaacatgattttaagttaactctcaca 28201947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 12556325 - 12556441
Alignment:
Q  19 catcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||    
T  12556325 catcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgcagaacctgatt 12556424  T
Q  119 ttaagttaactctcaca 135  Q
    |||| ||||||||||||    
T  12556425 ttaaattaactctcaca 12556441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 20504335 - 20504452
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||| ||| ||||||||||||| || ||||||||    
T  20504335 ccatcgtgccacgaaaaatccattgacttgcctcaaaactaaaacctccaatcgtgccacgttgcccagctatcgtgccacgatttctgcagaacctgat 20504434  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  20504435 tttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 2818729 - 2818847
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||| ||||||||||||| || ||||| ||    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcagaacctaat 2818828  T
Q  118 tttaag-ttaactctcaca 135  Q
    |||||| ||||||||||||    
T  2818829 tttaagtttaactctcaca 2818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 20507884 - 20508001
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||| |||||||||| | ||| ||||||||||||| || ||||||||    
T  20507884 ccatcgtgccacgaaaaatccaatgacttgcctcaaaactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcagaacctgat 20507983  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  20507984 tttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 21947887 - 21947770
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||| || ||||||||    
T  21947887 ccatcgtgccacgtaaagtccagtgacttacctcaaaactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaacctgat 21947788  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  21947787 tttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 659831 - 659713
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||||    ||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||| ||||||||||||| || ||||||    
T  659831 caccatcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgcagaacctg 659733  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  659732 attttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 36402726 - 36402845
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacct 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| | |||||||||||||| ||||  || |||| ||  |||||    
T  36402726 caccatcgtgccacgaaaaaaccagtgacttgcctcaaaactgaaacctccaatcgtgctatgttgcccagccatcgtgcctaga-ttctgcagaaacct 36402824  T
Q  115 gattttaagttaactctcaca 135  Q
     ||||||||||||||||||||    
T  36402825 aattttaagttaactctcaca 36402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 6756374 - 6756257
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||  ||| |||||| |||  |||| |||| |||||||||||||  | ||||||    
T  6756374 caccatcgtgccacgaaaaatccagtgacttgcctcaaagttgaaacctctaatcgtgccatgttatccaggcatcgtgccacgatttctgtagaacctg 6756275  T
Q  116 attttaagttaactctca 133  Q
    ||||||| ||||| ||||    
T  6756274 attttaaattaaccctca 6756257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 18186489 - 18186587
Alignment:
Q  37 ccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcaca 135  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |||| ||  ||| ||||||||||||||||||||||    
T  18186489 ccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacga-ttctgcagaaacttgattttaagttaactctcaca 18186587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 31466397 - 31466496
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||||||||| |   || ||||||||||||||  | ||| |||||||||| || || ||||||||||||||||||||||||||    
T  31466397 tccagtgacttgcctcataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgcaaaacctgattttaagttaactctcaca 31466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 661227 - 661288
Alignment:
Q  76 acgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcacaga 137  Q
    |||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  661227 acgttgcctagccatcataccacgatttctgcagaacctgattttaagttaactctcacaga 661288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 4236469 - 4236374
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactct 131  Q
    ||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||| | |||| ||  || |||||||||||||||||||    
T  4236469 tccagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccac-aattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 38881962 - 38881844
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 116  Q
    ||||||||||||||    ||||||| |||||||||||| || |||||| || | ||||||||||||||||| ||| |||||||||| || || | | |||    
T  38881962 ccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttga 38881864  T
Q  117 ttttaagttaactctcacag 136  Q
    ||||||||||||||||||||    
T  38881863 ttttaagttaactctcacag 38881844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 34479853 - 34479972
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacc 113  Q
    ||||||||||||||||    ||||||| ||||||| |||| || |||||| || | ||||||||||||||||||||| |||||||| |||| ||  ||||    
T  34479853 caccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacc 34479950  T
Q  114 tgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||||    
T  34479951 tgattttaagttaactctcaca 34479972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 25921872 - 25921992
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-c 112  Q
    ||||||||||||||||    ||||||| ||||||||||||  ||||||||| || | ||||||||||| ||| ||||| |||||||||| || || || |    
T  25921872 caccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgtccaaccatcgtgccacgatt-ctgcagaaac 25921969  T
Q  113 ctgattttaagttaactctcaca 135  Q
    |||||||||||||||||||||||    
T  25921970 ctgattttaagttaactctcaca 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 16775987 - 16775897
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||  |||||||| |||| ||| |||||||||  |||||| |||||||||| || || | |||||||||||||||| |||||||    
T  16775987 ttgcctcaaacttgaaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 2174799 - 2174680
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cc 113  Q
    ||||||||||||||||    ||||||| ||||||| |||| ||||||||| || | |||||||||||||  |||||| |||||||||| || || || ||    
T  2174799 caccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacc 2174702  T
Q  114 tgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||||    
T  2174701 tgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 21684905 - 21684969
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||| |||||||| |||| ||  ||||||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 21684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 34477515 - 34477632
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctg 115  Q
    ||||||||||||||    ||||||| ||||||| |||| || |||||| || | ||||||||||||||||||||| |||||||| |||| ||  ||| ||    
T  34477515 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacttg 34477612  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  34477613 attttaagttaactctcaca 34477632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 31544862 - 31544798
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| ||||||||||| | ||  ||||||||||||||||||||||||||    
T  31544862 gtgccacgttgcccagctatcgtgccacgattt-tgcagaaacctgattttaagttaactctcaca 31544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 31542506 - 31542441
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcacag 136  Q
    ||||||||||||||||| ||| || |||||||| | ||  |||||||||||||||||||||||||||    
T  31542506 gtgccacgttgcccagctatcgtgtcacgattt-tgcagaaacctgattttaagttaactctcacag 31542441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 659869 - 659929
Alignment:
Q  19 catcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgtt 80  Q
    |||||||||||||    ||||||||||||||||||| ||||||||| |||| ||||||||||    
T  659869 catcgtgccacgatttttccagtgacttgcctcaaa-ctgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 40032469 - 40032586
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| || ||||||||    
T  40032469 ccatcgtgccacgaaaaatccagtgacttgtctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcagaacctgat 40032568  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  40032569 tttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 6259237 - 6259351
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||||||| ||||||||||||||| | |||| |||||||||||| |||||||| ||||||||||||| || ||||||||    
T  6259237 ccatcgtgccacgatttttccagtgactttcctcaaaactgaaacatccaatagtgccacgttgcacagccatcgtgccacgatttctgcagaacctgat 6259336  T
Q  118 tttaagttaactctc 132  Q
    |||||||||||||||    
T  6259337 tttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 21521135 - 21521234
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||  | ||||||||||||||||||||||||||    
T  21521135 tccagtggcttgcttcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtagaacctgattttaagttaactctcaca 21521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 6264544 - 6264658
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||||    ||||||||||||||||||||||||||| | ||||  |||||||||||||| ||||| ||| || |||||| || ||||||    
T  6264544 caccatcgtgccacgatttttccagtgacttgcctcaaaactgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcagaacctg 6264643  T
Q  116 attttaagttaactc 130  Q
    |||||||||||||||    
T  6264644 attttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 43623966 - 43624085
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacct 114  Q
    ||||||||||||||||    | ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| || |||| ||  |||||    
T  43623966 caccatcgtgccacgattttttcagtgccttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatga-ttctgcagaaacct 43624064  T
Q  115 gattttaagttaactctcaca 135  Q
    ||||||||||||||| |||||    
T  43624065 gattttaagttaactttcaca 43624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 18800720 - 18800819
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||| ||| ||||||||| | |||| ||| ||||||||||| | | | ||||||||||||| || ||| ||||||||||||||||||||||    
T  18800720 tccagtgacttgcttcataactgaaacatccaatcgtgtcacgttgcccaacaaacgtgccacgatttctccagaacatgattttaagttaactctcaca 18800819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 42064348 - 42064231
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| || | || |||||||||||||| ||| |||||||||| || || | | ||||    
T  42064348 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccagtcgtaccacgttgcccagcaatcgtgccacgattcctgcagatcttgat 42064249  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  42064248 tttaagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 22407854 - 22407948
Alignment:
Q  41 tgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||||||||||||||||||||| | |||| |||||| ||| |||  | ||| |||||||||| || || ||||| ||||||| ||||||||||||    
T  22407854 tgacttgcctcaaaactgaaacatccaatcgtgccatgttacccttcaatcgtgccacgattcctgcagaacctaattttaaattaactctcaca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 24162634 - 24162752
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacct- 114  Q
    ||||||||||||||    ||||||| ||||||||||||  ||||||||| || | ||||||||||||||| ||||  |||||||||| || || || ||     
T  24162634 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccaaccattgtgccacgatt-ctgcagaaactt 24162731  T
Q  115 gattttaagttaactctcaca 135  Q
    |||||||||||||||||||||    
T  24162732 gattttaagttaactctcaca 24162752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 19502433 - 19502550
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctg 115  Q
    ||||||||||||||    ||||||| ||||||| |||| ||||||||| || | |||||||||||||  |||||| |||||||||| || || || ||||    
T  19502433 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcca-tcgtgccacgttgccttgccatcgtgccacgatt-ctgcagaaacctg 19502530  T
Q  116 attttaagttaactctcaca 135  Q
    |||||||||||||| |||||    
T  19502531 attttaagttaactatcaca 19502550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 35107062 - 35107018
Alignment:
Q  91 catgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||| |||| ||||| |||||||| ||||||||||||||||||||    
T  35107062 catgacacgttttctccataacctaattttaagttaactctcaca 35107018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 48486230 - 48486113
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||  |||||||    
T  48486230 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcaggacctgat 48486131  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  48486130 tttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 619869 - 619986
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||  | ||| ||| || ||| ||||||||||||||    
T  619869 ccatcgtgccacgaaaaatccaatgacttgcctcaaaactgaaacatccaattgtgccacgttgaccttcaatcgtgcgacaattcctacataacctgat 619968  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  619969 tttaagttaactctcaca 619986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 52942890 - 52943002
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||| |||| ||||||||||||||| ||||| ||||||||||| | || ||||||||    
T  52942890 ccatcgtgccacgaaatattcagtgacttgcctcaaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgccacgatttttgcaaaacctgat 52942989  T
Q  118 tttaagttaactc 130  Q
    |||||||||||||    
T  52942990 tttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 36920009 - 36920125
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||| | || ||||||||    
T  36920009 ccatcgtgccacgatttttccagtgacttgcctcaaaattgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaacctgat 36920107  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  36920108 tttaagttaactctcaca 36920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 36921917 - 36922033
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| | ||||||||| | || ||||||||    
T  36921917 ccatcgtgccacgatttttccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattt-tgcagaacctgat 36922015  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  36922016 tttaagttaactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 24878900 - 24878836
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgc 82  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||    
T  24878900 ccatcgtgccacgaaaaatccagtgacttgcgtcaaaactgaaacctccaatcgtgccacgttgc 24878836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 31850039 - 31850138
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||||||||| ||| |||||| ||| || || | | ||||||||||||||||||||||    
T  31850039 tccagtgccttgccccaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcagatcttgattttaagttaactctcaca 31850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 3825013 - 3825112
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcac 134  Q
    |||||||  |||||||||||||||||||| |||| |||||| |||||||||||||| || ||||| |||| ||  |||||||||||||||||||||||||    
T  3825013 tccagtgctttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgtcacga-ttctgcagaaacctgattttaagttaactctcac 3825111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 5637908 - 5638006
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||| |||||||||||||||||||| || || ||||||||||||||||| ||| |||||||||| |     ||||||||||||||||||||||||||    
T  5637908 tccagtgccttgcctcaaaactgaaacc-tccatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 24880362 - 24880299
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttg 81  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  24880362 ccatcgtgccgcgaaaaatccagtgacttgcctcaaaactgaaacctccattcgtgccacgttg 24880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 11434889 - 11434767
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-c 112  Q
    ||||||||||||||||    ||||||| ||||||||||||  ||||||||| || | ||||||||||||||||||||| | |||||||| || || || |    
T  11434889 caccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccagccatcgtaccacgatt-ctgcagaaac 11434792  T
Q  113 ctgattttaagttaactctcacaga 137  Q
    |||||||||||||||||||||||||    
T  11434791 ctgattttaagttaactctcacaga 11434767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 7941233 - 7941132
Alignment:
Q  36 tccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctc 132  Q
    ||||||| ||||||||||||  ||||||||| || | ||||||||||||||||||||| |||||||| |||| ||  |||||||||||||||||||||||    
T  7941233 tccagtgccttgcctcaaaaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctc 7941136  T
Q  133 acag 136  Q
    ||||    
T  7941135 acag 7941132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 22801260 - 22801346
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt 102  Q
    ||||||||||||||||    ||||||  ||||||||||||||||||||| |||| ||| ||||||||||| ||||| ||||||||||    
T  22801260 caccatcgtgccacgatttttccagttccttgcctcaaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgatt 22801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 22803173 - 22803239
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt 102  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||| | ||||||||    
T  22803173 tccagtgcctttcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatt 22803239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 40091869 - 40091952
Alignment:
Q  50 tcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctca 133  Q
    |||||||||||| || |||| |||||||||| |||| ||| | ||||||||||  | || ||||||||||||||||||||||||    
T  40091869 tcaaaactgaaatctccaatcgtgccacgttacccaaccaccgtgccacgattattgcagaacctgattttaagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 9148171 - 9148054
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| | ||||||||||||||| ||| | |||||||| ||  | | | ||||    
T  9148171 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgcgccacgttgcccagcaatcgtaccacgattcctgaagatcttgat 9148072  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  9148071 tttaagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 11006663 - 11006781
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaact-gaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa--cct 114  Q
    ||||||||||||||    ||||||| ||||||| |||| | ||||||| || | ||||||||||||||||| ||| |||||||||| || |||||  |||    
T  11006663 ccatcgtgccacgatttttccagtgccttgcctaaaaaattgaaacctcca-tcgtgccacgttgcccagcgatcgtgccacgatt-ctgcataaaacct 11006760  T
Q  115 gattttaagttaactctcaca 135  Q
    |||||||||||||||||||||    
T  11006761 gattttaagttaactctcaca 11006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 5198304 - 5198217
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctc 132  Q
    ||||||||||  ||||| || |||| ||||||||||||||||| |||||| || |||| || || | | |||||||||||||||||||    
T  5198304 ttgcctcaaacttgaaatctccaatcgtgccacgttgcccagcaatcatgtcatgattcctgcagatcttgattttaagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 24888707 - 24888589
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctga 116  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| ||||||||||||| ||||||| |||||| | |||| ||  || ||||    
T  24888707 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccac-aattctgcagaaatctga 24888609  T
Q  117 ttttaagttaactctcacag 136  Q
    ||||||||||||||| ||||    
T  24888608 ttttaagttaactcttacag 24888589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 16932296 - 16932360
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||||||||||||||| || |||||||||| || || || ||||||||||||||||||||||||    
T  16932296 gtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 16932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 9174621 - 9174684
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||| |||||||| |||| || |||||||||| || || ||||||||||||||||||||||||||    
T  9174621 gtgctacgttgcctagccgtcgtgccacgatt-ctgcagaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 18847016 - 18846923
Alignment:
Q  44 cttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctac---ataacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||| |||| |||||||| | |||| | ||| |||||||| |||| |   | || |||||||||||||||||||||||    
T  18847016 cttgcctcaaaactgaaacctccaatcgtgccacgattcccaacaatcgtgccacga-ttctgcagaaaaatctgattttaagttaactctcaca 18846923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 47274569 - 47274522
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcac 134  Q
    ||||| || ||||||||||||||| ||| |||||||||||||||||||    
T  47274569 ccatcgtggcacgatttctacatatcctaattttaagttaactctcac 47274522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 51015139 - 51015042
Alignment:
Q  36 tccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctgattttaagttaactctca 133  Q
    ||||||| ||||||| |||| ||||||||| || | |||||||||||||  ||||||||||||||||| || || ||  |||||||||||||||||||||    
T  51015139 tccagtgccttgcctaaaaaactgaaacctcca-tcgtgccacgttgccttgccatcatgccacgatt-ctgcagaaatctgattttaagttaactctca 51015042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 22044811 - 22044930
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaac---tgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacct 114  Q
    ||||||||||||||    ||||||| ||||||||||||    |||||||| || | ||||||||||||||  | ||| |||||||||| || || | | |    
T  22044811 ccatcgtgccacgatttttccagtgccttgcctcaaaaaaaatgaaacctcca-tcgtgccacgttgcccttcaatcgtgccacgattcctgcagatctt 22044909  T
Q  115 gattttaagttaactctcaca 135  Q
    |||||||||||||||||||||    
T  22044910 gattttaagttaactctcaca 22044930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 16934650 - 16934714
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||| ||||||||||| || |||||||||| || || || ||||||||||||||||||||||||    
T  16934650 gtgccatgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 16934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 22780888 - 22780952
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| | |||||||| || || || ||||||||||||||||||||||||    
T  22780888 gtgccacgttgcccagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 22780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 22783253 - 22783317
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| | |||||||| || || || ||||||||||||||||||||||||    
T  22783253 gtgccacgttgcccagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 22783317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 48362067 - 48362186
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||| | |||| ||||||||||||||| ||||| |||||||||||||||| ||||||    
T  48362067 caccatcatgccacgaaaaatctagttacttgcctcaaaactgaaacttccaatcgtgccacgttgcccaaccatcgtgccacgatttctacagaacctg 48362166  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  48362167 attttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 32264463 - 32264580
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 116  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||||||||||| || |||||||    
T  32264463 ccatcgtgccacgaaaaatccagtgacttgcctcaaaaactgaaacctccaatcgtgccacgtt-cccagccatcgtgccacgatttctgcaaaacctga 32264561  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  32264562 ttttaagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 32218955 - 32218836
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||| ||||||||| |||||||||||||  |||||||| |||| |||||||||||||||  |||| ||||||||||||| || ||||||    
T  32218955 caccatcgtgccacggaaaatccagcgacttgcctcaaagttgaaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaacctg 32218856  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  32218855 attttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 18099590 - 18099707
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctga 116  Q
    ||||||||||||||    ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| | ||  |||||||    
T  18099590 ccatcgtgccacgatttttccagtgtcttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaaacctga 18099688  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  18099689 ttttaagttaactctcaca 18099707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 18097331 - 18097422
Alignment:
Q  44 cttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| | ||  ||||||||||||||||||||||||||    
T  18097331 cttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt-tgcagaaacctgattttaagttaactctcaca 18097422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 26720385 - 26720268
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| ||||  ||||||||||| |||||||| |||||||||| || || | ||||||    
T  26720385 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcagatcctgat 26720286  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  26720285 tttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 5523061 - 5523152
Alignment:
Q  44 cttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||  |||| |||||| |||||||||| ||| |||||||||| || || | | ||||||||||||||||||||||    
T  5523061 cttgcctcaaaactgaaaccaccaatcgtgccatgttgcccagcaatcttgccacgattcctccagatcttgattttaagttaactctcaca 5523152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 24177098 - 24176999
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||| ||| |||||||||   |||| |||||||||||||| || | | ||||||||||||| || ||| ||||||||||||||||||||||    
T  24177098 tccagtgacttgcttcagaactgaaacaaccaatcgtgccacgttgccctgcaaacgtgccacgatttctccagaacttgattttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 5191490 - 5191374
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctga 116  Q
    ||||||||||||||    ||||||  ||||||||||||||||||||| |||| |||||||| |||||||| ||| |||||||||| || || ||  ||||    
T  5191490 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgatt-ctgcagaaatctga 5191392  T
Q  117 ttttaagttaactctcac 134  Q
    ||||||||||||||||||    
T  5191391 ttttaagttaactctcac 5191374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 10956447 - 10956563
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||| |||||| |||||||||||||| |||| |||||| | || ||||||||  |||||||||| || || | ||||||    
T  10956447 ccatcgtgccacgatttttccagtgccttgccccaaaactgaaacctccaatcgtgccatgatgtccagccat-gtgccacgattcctgcagatcctgat 10956545  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  10956546 tttaagttaactctcaca 10956563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 11162990 - 11162890
Alignment:
Q  36 tccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcac 134  Q
    ||||||| |||||||||||| ||||||||| || | ||||||||||||||||| ||| |||||||||| || || | | |||||||||||||||||||||    
T  11162990 tccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcac 11162892  T
Q  135 ag 136  Q
    ||    
T  11162891 ag 11162890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 22114743 - 22114842
Alignment:
Q  36 tccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctca 133  Q
    ||||||| |||||||||||| ||||||||| || | ||||||||||||||| ||||| |||||||||| ||||| || ||||||||||||||||||||||    
T  22114743 tccagtgccttgcctcaaaaactgaaacctcca-tcgtgccacgttgcccaaccatcgtgccacgatt-ctacagaaacctgattttaagttaactctca 22114840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 1321251 - 1321159
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcacaga 137  Q
    ||||||||||  ||||||||  ||| ||||||||||||||||| ||| |||||||||| || || | | ||||||||||||||||||||||||    
T  1321251 ttgcctcaaacttgaaacctctaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcacaga 1321159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 7606881 - 7606963
Alignment:
Q  52 aaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    ||||||||||||| || | ||||||||||||||||||||| || ||||||| || || || ||||||||||||||||||||||||    
T  7606881 aaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgtcacgatt-ctgcagaaacctgattttaagttaactctcaca 7606963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 10085493 - 10085576
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt 102  Q
    ||||||||||||||    ||||||| |||||||||||||||||||| || || |||||||||||||  || ||||||||||||||    
T  10085493 ccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacc-tccatcgtgccacgttgccttgcgatcatgccacgatt 10085576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 11170244 - 11170145
Alignment:
Q  36 tccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcac 134  Q
    ||||||| |||||||||||| | ||||||| || | ||||||||||||||||| | | |||||||||| || || | | |||||||||||||||||||||    
T  11170244 tccagtgccttgcctcaaaaaccgaaacctcca-tcgtgccacgttgcccagcaaccgtgccacgattcctgcagatcttgattttaagttaactctcac 11170146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 24979566 - 24979514
Alignment:
Q  17 accatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaat 69  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  24979566 accatcgtgccacgaaaaattcagtgacttgccacaaagctgaaacctccaat 24979514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 38210131 - 38210067
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||||||||||||||| || |||||||||| || || || ||||||||||||||||||||||||    
T  38210131 gtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 38210067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 50493740 - 50493676
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| |||||||||| || || || ||||||||||||||||||||||||    
T  50493740 gtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 50493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 53896690 - 53896754
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| |||||||||| || || || ||||||||||||||||||||||||    
T  53896690 gtgccacgttgcccagcaatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 6063939 - 6064006
Alignment:
Q  68 attgtgccacgttgcccagccatcatgccacgatttctacat-aacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||  |||||| |||||||| |||| ||| |||||||||||||||||| |||||||    
T  6063939 attgtgccacgttgccttgccatcgtgccacga-ttctgcataaacctgattttaagttaattctcaca 6064006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 10192413 - 10192496
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt 102  Q
    ||||||||||||||    ||||||| |||||||||||||||||||| || || |||||||||||||  || ||| ||||||||||    
T  10192413 ccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacc-tccatcgtgccacgttgccttgcgatcgtgccacgatt 10192496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 1072277 - 1072395
Alignment:
Q  17 accatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 116  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||| ||||| | ||||||||||| || |||||||    
T  1072277 accatcgtgccacgaaaaatccaatgacttgcctcaaaacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaacctga 1072376  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  1072377 ttttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 8995372 - 8995255
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||| ||||||  ||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||| | ||||||    
T  8995372 ccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgat 8995273  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  8995272 tttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 9019819 - 9019702
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||| ||||||  ||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||| | ||||||    
T  9019819 ccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctacagatcctgat 9019720  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  9019719 tttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 15530571 - 15530661
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||||| |||||||||| || || | ||||||||||||||||||||||||    
T  15530571 ttgcctcaaacttgaaacctccaattgtgccacgttacccagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 32279912 - 32279794
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||||    ||||| ||||||||||| ||||||||| | |||| ||||||||||||||| | ||| || |||| || || || || |||    
T  32279912 caccatcgtgccacgacttttccagcgacttgcctcagaactgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcctgcagaa-ctg 32279814  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  32279813 attttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 14507634 - 14507717
Alignment:
Q  52 aaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctgattttaagttaactctcacag 136  Q
    ||||||||||||| || | ||||||||||||||||||||| |||||||||| || || ||  ||||||||||||||||||||||||    
T  14507634 aaaactgaaacctcca-tcgtgccacgttgcccagccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctcacag 14507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 19227831 - 19227948
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaact-gaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 116  Q
    ||||||||||||||    ||||||| |||||||||||| | ||||||| || |  |||||||||||||| ||||| |||||||||| || || | | | |    
T  19227831 ccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctcca-tcatgccacgttgcccaaccatcgtgccacgattcctgcagatcttaa 19227929  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  19227930 ttttaagttaactctcaca 19227948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 26066547 - 26066611
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||||||||||  ||| || |||||||||| ||||| || ||||||||||||||||||||||||    
T  26066547 gtgccacgttgccttgccgtcgtgccacgatt-ctacagaaacctgattttaagttaactctcaca 26066611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4816689 - 4816749
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacg 78  Q
    ||||||||||||||    ||||||  ||||||||||||||||||||| |||| ||||||||    
T  4816689 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 15541631 - 15541679
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||| || |||||||||| || | ||||||||||||||||||||||||    
T  15541631 ccatcgtggcacgatttctgcaaatcctgattttaagttaactctcaca 15541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 24191620 - 24191668
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||| || ||||||||||  | ||||||||||||||||||||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 24192717 - 24192765
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||| || ||||||||||  | ||||||||||||||||||||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 18567480 - 18567363
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||| |||||||||||||  | ||||||||    
T  18567480 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgat 18567381  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||| ||||||||||    
T  18567380 tttaagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 31435469 - 31435586
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||| |||||||||||||  | ||||||||    
T  31435469 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagctatcgtgccacgatttctgtagaacctgat 31435568  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||| ||||||||||    
T  31435569 tttaagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 27306651 - 27306767
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||| | || ||||| ||    
T  27306651 ccatcgtgccacgatttttccaatgacttgcctcaaaactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattt-tgcaaaaccttat 27306749  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  27306750 tttaagttaactctcaca 27306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 26804464 - 26804345
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt-tctacataacct 114  Q
    ||||||||||||||||    |||| || ||||||||||||||||||||| |||| || |||||||||||||||||| |||||||||| | || | |||||    
T  26804464 caccatcgtgccacgatttttccactgccttgcctcaaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtaga-aacct 26804366  T
Q  115 gattttaagttaactctcaca 135  Q
    |||||||||||||||||||||    
T  26804365 gattttaagttaactctcaca 26804345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 1049722 - 1049813
Alignment:
Q  44 cttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||| ||| |||||||||| || || | | ||||||||||||||||||||||    
T  1049722 cttgcttcaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 1049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 3878439 - 3878321
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctga 116  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| ||||||||||||||||||||| |||||||||| || || ||  ||||    
T  3878439 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatt-ctgcagaaatctga 3878341  T
Q  117 ttttaagttaactctcacag 136  Q
    ||||||||||||||||||||    
T  3878340 ttttaagttaactctcacag 3878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 35496 - 35379
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| ||||||||||||| ||| ||| |||||||||| || || | | ||||    
T  35496 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcagatcttgat 35397  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  35396 tttaagttaactctcaca 35379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 25542397 - 25542281
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    || |||| ||||||| ||||||||||||| |||| ||||||||||||||||| ||| |||||| ||| || || | | ||||    
T  25542397 ccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccac-attcctgcagatcttgat 25542299  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  25542298 tttaagttaactctcaca 25542281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 44413 - 44314
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||||||  |||| |||||  |||||||| |||| ||||||| ||||||||  ||| |||||||||| || || | | ||||||||||||||||||||||    
T  44413 tccagtgctttgcgtcaaacttgaaacctccaatcgtgccacattgcccagaaatcgtgccacgattcctgcagatcttgattttaagttaactctcaca 44314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 40837142 - 40837262
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cc 113  Q
    ||||||||||||||||    ||||||| ||||||| |||| ||||||||| || | ||||||||||| ||  ||||| |||||||||| || || || ||    
T  40837142 caccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctcca-tcgtgccacgttgtccgaccatcgtgccacgatt-ctgcagaaacc 40837239  T
Q  114 tgattttaagttaactctcacag 136  Q
    |||||||||||||||||||||||    
T  40837240 tgattttaagttaactctcacag 40837262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 1047439 - 1047503
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcaca 135  Q
    |||||||||||||||||| || |||||||||| || || || ||||||||||||||||||||||||    
T  1047439 gtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 1047503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 22392340 - 22392292
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||| || |||||||||| |||||||||||||||| ||||||||||||    
T  22392340 ccatcgtggcacgatttctccataacctgattttaaattaactctcaca 22392292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 42006354 - 42006316
Alignment:
Q  97 acgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  42006354 acgatttctccaaaacctgattttaagttaactctcaca 42006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 4423954 - 4423835
Alignment:
Q  16 caccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctg 115  Q
    ||||||||||||||||    ||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||  |||||||||| || || | | ||    
T  4423954 caccatcgtgccacgatttttccagtgccttgccttaaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgcagatcttg 4423855  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  4423854 attttaagttaactctcaca 4423835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 15067876 - 15067777
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||| ||||| ||||||||||||||| |||| |||||| |||||||||||||| |||||||||| || || || |||||||||||||||| ||||||    
T  15067876 tccagtggcttgcttcaaaactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgcaaaatctgattttaagttaacactcaca 15067777  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 12517475 - 12517565
Alignment:
Q  45 ttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||||||||||||||||||| |||| |||||||||||||  |||||| |||||||||| || || | ||||||||||||||||||||||||    
T  12517475 ttgcctcaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 12517565  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 135
Target Start/End: Complemental strand, 15072602 - 15072506
Alignment:
Q  39 agtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    |||| ||||| ||||||||||||||| |||| ||| ||||||||||||||||| || ||||||| || || || |||||||||||||||||||||||    
T  15072602 agtggcttgcttcaaaactgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatctgattttaagttaactctcaca 15072506  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 28252009 - 28252127
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| || |||||||||| ||||||| |||||||||| || || | ||||||    
T  28252009 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtaccacgttgcctagccatcgtgccacgattcctgcagatcctgat 28252108  T
Q  118 tttaagttaactctcacag 136  Q
    |||||||||||||| ||||    
T  28252109 tttaagttaactctaacag 28252127  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 44720735 - 44720617
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt-tctacataacctga 116  Q
    ||||||||||||||    ||||||  ||||||||||||||||||||| |||  |||||||  |||||||| |||||||||||||| |  | | |||||||    
T  44720735 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacctga 44720636  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  44720635 ttttaagttaactctcaca 44720617  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 14807665 - 14807552
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctaca-taacctga 116  Q
    ||||||||||||||    |||||||  ||||||||||  |||||||| |||| ||| ||||||||||| |||||||||||||| |||| ||  |||||||    
T  14807665 ccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgcccaaccatcatgccacga-ttctgcagaaacctga 14807567  T
Q  117 ttttaagttaactct 131  Q
    |||||||||||||||    
T  14807566 ttttaagttaactct 14807552  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 27829210 - 27829093
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaac-tgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctga 116  Q
    ||||||||||||||    |||||||  |||||||||||  |||||||| || | ||||||||||||||||| ||| |||||||||| || || | |||||    
T  27829210 ccatcgtgccacgatttttccagtgttttgcctcaaaaaatgaaacctcca-tcgtgccacgttgcccagcaatcgtgccacgattcctgcagatcctga 27829112  T
Q  117 ttttaagttaactctcaca 135  Q
    |||||||||||||||||||    
T  27829111 ttttaagttaactctcaca 27829093  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 27826846 - 27826782
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||| ||| |||||||||| || || | ||||||||||||||||||||||||    
T  27826846 gtgccacgttgcccagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27826782  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 18812785 - 18812668
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaa-ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctg 115  Q
    ||||||||||||||    ||||||| ||||||| |||| || |||||| || | |||||||||||||||||| || |||||||||| || || || ||||    
T  18812785 ccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctcca-tcgtgccacgttgcccagccgtcgtgccacgatt-cttcagaaacctg 18812688  T
Q  116 attttaagttaactctcaca 135  Q
    ||||||||||||||||||||    
T  18812687 attttaagttaactctcaca 18812668  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 18810547 - 18810482
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctacataa-cctgattttaagttaactctcacag 136  Q
    |||||||||||||||||| || |||||||||| || || || |||||||||||||||||||||||||    
T  18810547 gtgccacgttgcccagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacag 18810482  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 3886340 - 3886407
Alignment:
Q  36 tccagtgacttgcctcaaaa--ctgaaaccttcaattgtgccacgttgcccagccatcatgccacgatt 102  Q
    ||||||| ||||||||||||  ||||||||| || | ||||||||||| |||||||||||| |||||||    
T  3886340 tccagtgtcttgcctcaaaaaactgaaacctcca-tcgtgccacgttgtccagccatcatgtcacgatt 3886407  T

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Target: scaffold0131 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 14885 - 14768
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctga 116  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||| | | || || |||||||||||  | ||| |||||||||| || || || |||||    
T  14885 ccatcgtgccacgaaatttccagtgacttgcctcataactgaaacttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctga 14786  T
Q  117 ttttaagttaactctcac 134  Q
    ||||||||||||||||||    
T  14785 ttttaagttaactctcac 14768  T

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Target: scaffold0250 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 2746 - 2629
Alignment:
Q  18 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataacctgat 117  Q
    ||||||||||||||    ||||||  ||||||||||||||||||||| |||| ||||||||||||| ||| ||| || ||| ||| || || | | ||||    
T  2746 ccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagatcttgat 2647  T
Q  118 tttaagttaactctcaca 135  Q
    ||||||||||||||||||    
T  2646 tttaagttaactctcaca 2629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 73445 - 73540
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacat-aacctgattttaagttaactct 131  Q
    |||||||  ||||||||||  |||||||| |||| ||||||||||||| ||||||| |||||||| |||| ||| || |||||||||||||||||||    
T  73445 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacga-ttctgcataaatctgattttaagttaactct 73540  T

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Target: scaffold0025; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 69734 - 69829
Alignment:
Q  36 tccagtgacttgcctcaaaactgaaaccttcaattgtgccacgttgcccagccatcatgccacgatttctacataac-ctgattttaagttaactct 131  Q
    |||||||  ||||||||||  |||||||| |||| ||||||||||||| ||||||| |||||||||| || || ||  |||||||||||||||||||    
T  69734 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatt-ctgcagaaatctgattttaagttaactct 69829  T

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Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 29005 - 28941
Alignment:
Q  71 gtgccacgttgcccagccatcatgccacgatttctaca-taacctgattttaagttaactctcaca 135  Q
    ||||||||||||||||||||| |||||||| |||| ||  ||||||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 28941  T

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Target: scaffold0339 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 3794 - 3747
Alignment:
Q  87 ccatcatgccacgatttctacataacctgattttaagttaactctcac 134  Q
    ||||| || ||||||||||||||| ||| |||||||||||||||||||    
T  3794 ccatcgtggcacgatttctacatatcctaattttaagttaactctcac 3747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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