View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967_high_6 (Length: 333)
Name: NF5967_high_6
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 25777406 - 25777280
Alignment:
| Q |
1 |
cactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattcttgacctgaggaggtactttgagtttccat |
100 |
Q |
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| T |
25777406 |
cactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattcttgacctgaggaggtactttgagtttccat |
25777307 |
T |
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| Q |
101 |
attaaatttcaccgacctaaaacatgt |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
25777306 |
attaaatttcaccgacctaaaacatgt |
25777280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 1538928 - 1538823
Alignment:
| Q |
219 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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| Q |
319 |
tattat |
324 |
Q |
| |
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|||||| |
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| T |
1538828 |
tattat |
1538823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 17768975 - 17768870
Alignment:
| Q |
219 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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| Q |
319 |
tattat |
324 |
Q |
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|||||| |
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| T |
17768875 |
tattat |
17768870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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