View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967_high_7 (Length: 317)
Name: NF5967_high_7
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 48422424 - 48422733
Alignment:
| Q |
1 |
cattgatctgtcatgagtttaagcacagctgcaacctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagatag |
100 |
Q |
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| T |
48422424 |
cattgatctgtcatgagtttaagcgcagctgcaacctacaagagaagaataagatatattgtccgatttgaaaaccactttaggtaaagcatttagatag |
48422523 |
T |
|
| Q |
101 |
gggagggtcctaaaccattttagcaaaaactttaacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48422524 |
gggagggtcctaaaccattttagcaaaaactttaacttgtttatttgggatgtacgatgtaaagacgataatattgtaaaattaatttacttctttattt |
48422623 |
T |
|
| Q |
201 |
ggaatatataatctaatgacgatattgacagcacttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttcccac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48422624 |
agaatatataatctaatgacgatattgacagcacttgtaatatgaattttgttttgttcaatttagacatttaatgctcgagtatttgtcgttttcccac |
48422723 |
T |
|
| Q |
301 |
aggttctgct |
310 |
Q |
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|||| |||| |
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| T |
48422724 |
tggttttgct |
48422733 |
T |
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