View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967_low_1 (Length: 645)
Name: NF5967_low_1
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 9 - 645
Target Start/End: Complemental strand, 32558048 - 32557409
Alignment:
| Q |
9 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32558048 |
agcagagatacgcgatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggc |
32557949 |
T |
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| Q |
109 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacccgacnnnnnnnnnnnnnnnn |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32557948 |
atgcgtggctcacgtgctcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacctgaccaacaacaacaacaac |
32557849 |
T |
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| Q |
209 |
nnn---ctcaaagtttttacgacctttcttttgttcttcaacctgaaccggttcctattcaacaaaacccggggttgtctatcgacccggtttcagtcat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32557848 |
aacaacctcaaagtttttacgacctttcttttgttcttcaacctgaacccgttcctattcaacaaaacccggggttgtctatcgacccggtttcaatcat |
32557749 |
T |
|
| Q |
306 |
aacttcctctgggagttacggttacggtgagggaaatgataataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557748 |
aacttcctctgggagttacggttacggtgagggaaatgataataattatttcaataaatacagtcttcctcatcaagttcctcttgatacattggaggct |
32557649 |
T |
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| Q |
406 |
agtattaataacattaataacaatggaaattcctattttaacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttata |
505 |
Q |
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| T |
32557648 |
ggtattaataacattaataataatggaaattcctattttaacaacgacaatgttgagcttcctccgttgccaccggatattactagctctgcctgttata |
32557549 |
T |
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| Q |
506 |
gtccaggtgattcagtattcaacggaggcgatcatggttatttttattcatcatgggagcagaatgcatcagaagactgttataataatcaaatgttggg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32557548 |
gtccaggtgattcagtattcaacggaggcgatcatggttatttttattcatcatgggagcagaatgcatcagaagattgttataataatcaaatgttggg |
32557449 |
T |
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| Q |
606 |
aacaaatatgggaggtgcagagaataatattatggcaggt |
645 |
Q |
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| T |
32557448 |
aacaaatatgggaggtgcagagaataatattatggcaggt |
32557409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 6507735 - 6507659
Alignment:
| Q |
22 |
gatccttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagc |
98 |
Q |
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|||||| |||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||| ||||| || ||||| |
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| T |
6507735 |
gatcctgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagc |
6507659 |
T |
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