View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5967_low_10 (Length: 249)
Name: NF5967_low_10
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_low_10 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 49686813 - 49687055
Alignment:
| Q |
11 |
aatatctaatgattagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcga |
110 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686813 |
aatatctaatgatgagcccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcga |
49686912 |
T |
|
| Q |
111 |
ttgttagctgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgttattaccgtgataaaaagagtaattgtcttgctcacat----g |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
49686913 |
ttgttagctgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgttattaccgtgataaaaagagtaattgtcgtgctcacatcaacg |
49687012 |
T |
|
| Q |
207 |
gacaaatttattgcgccgcgaggtaatgtacaattaacaaaac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49687013 |
gacaaatttattgcgccgcgaggtaatgtacaattaacaaaac |
49687055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 49691087 - 49691235
Alignment:
| Q |
19 |
atgattagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgattgttagc |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | || ||||||||||||| | ||||||| ||||||||||| ||||||||||||| || ||| | |
|
|
| T |
49691087 |
atgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggtaacccatttccctttttaac |
49691186 |
T |
|
| Q |
119 |
tgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgt |
167 |
Q |
| |
|
| |||||||||||||| | ||| ||||||||||| | |||| ||||||| |
|
|
| T |
49691187 |
taatgaaattacctttcagttccaatcttcatatgactgtcaacagtgt |
49691235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 49679453 - 49679672
Alignment:
| Q |
19 |
atgattagtccaaccactctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgattgttagc |
118 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| | || ||||||||||||| | ||||||| ||||||||||| || || ||||||| ||| |||| |
|
|
| T |
49679453 |
atgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccattcttaga |
49679552 |
T |
|
| Q |
119 |
tgatgaaattacctttaatttcaaatcttcatattattgtcgacagtgttattaccgtgataaaaagagtaattgtcttgctcac----atggacaaatt |
214 |
Q |
| |
|
|||| |||| |||||| | |||||| |||||||| | || || ||| |||||||||||||||| | |||||||| || | || | ||||||||| |
|
|
| T |
49679553 |
tgatcaaataacctttcagttcaaaccttcatatatctttcaccaatgtcattaccgtgataaaaatattaattgtcgtgttgacagaaaaggacaaatt |
49679652 |
T |
|
| Q |
215 |
tattgcgccgcgaggtaatg |
234 |
Q |
| |
|
|||||| |||| |||||||| |
|
|
| T |
49679653 |
tattgccccgcaaggtaatg |
49679672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University