View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5967_low_12 (Length: 245)
Name: NF5967_low_12
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 54181033 - 54181250
Alignment:
| Q |
18 |
attctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggtaacattgttttgattagtagtagtggtacaacaaatagtttca |
117 |
Q |
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| T |
54181033 |
attctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggtaacattgttttgattagtagtagtggtacaacaaatagtttca |
54181132 |
T |
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| Q |
118 |
tcaagatgggaagaaaaatttgagggtgtagtagctatttcttcaaaacgctttgcattattcatgttaggaaataagaatgtgatttcactatcattgc |
217 |
Q |
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| T |
54181133 |
tcaaaatgggaagaaaaatttgagggtgtagtagctatttcttcaaaacgctttgcattattcatgttaggaaataagaatgtgatttcactatcattgc |
54181232 |
T |
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| Q |
218 |
tagccaaataagaataat |
235 |
Q |
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| T |
54181233 |
tagccaaataagaataat |
54181250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 41947608 - 41947547
Alignment:
| Q |
167 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataa |
228 |
Q |
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| T |
41947608 |
gctttgcattgttcatgttagaaagtaagaatgtcattccactattattgctagccaaataa |
41947547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 1210362 - 1210301
Alignment:
| Q |
167 |
gctttgcattattcatgttaggaaataagaatgtgatttcactatcattgctagccaaataa |
228 |
Q |
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| T |
1210362 |
gctttgcattgttcatgttaggaagtaagaatgccattccactattattgctagccaaataa |
1210301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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