View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5967_low_2 (Length: 461)
Name: NF5967_low_2
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 2137605 - 2137154
Alignment:
| Q |
1 |
gcattgtccattctttgttatcaaatttctggaaaactatgacggccaaattggttatgttcaatttgatgtaatagatagatagatgcatacattaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2137605 |
gcattgtccattctttgttatcaaatttctggaaaactatgacgaccaaattggttatgttcaatttgatgtaatagatagatagatgcatacattaaca |
2137506 |
T |
|
| Q |
101 |
attgcatttggatttagagggttgttcctccttgtccttggttccaaatgatgcaaccctcccacccgtttcattcatggcttgatttaacatgagcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2137505 |
attgcatttggatttagagggttgttcctccttgtccttggttccaaatgatgcaaacgtcccacccgtttcattcatggcttgatttaacacgagcctt |
2137406 |
T |
|
| Q |
201 |
agagcgtgattttggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaatgatgctgcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2137405 |
agagcgtgattttggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaatgatgctgcg |
2137306 |
T |
|
| Q |
301 |
ggtagtttacggctctataaaataaagttgttattgcatttactattaaatcaagctttacatagtgcattgaatcatgtttcagcaaatgtaatacaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
2137305 |
ggtagtttacggctctataaaataaaattgttattgcatttactattaaatcaagctttacatagtgcattgaatcatggttcagcaaatgtaacacaac |
2137206 |
T |
|
| Q |
401 |
cctaagaataacactaattaggattttcgttattttcttctattagtataat |
452 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2137205 |
cctgagaataacactaattaggattttcggtattttcttctattagtataat |
2137154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 114 - 290
Target Start/End: Complemental strand, 2128193 - 2128017
Alignment:
| Q |
114 |
ttagagggttgttcctccttgtccttggttccaaatgatgcaaccctcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgatttt |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2128193 |
ttagagggttgttcctccttatccttggttccaaatgatgcaaacgtcccacccgtttcattcatggcttgatttaacacgagccttagagcgtgatttt |
2128094 |
T |
|
| Q |
214 |
ggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaa |
290 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2128093 |
ggaccttctttgtatgagtgccctagagaaagctatgttgtttaagcttcaccaaaactgattctattagtgatcaa |
2128017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 2081176 - 2081273
Alignment:
| Q |
135 |
tccttggttccaaatgatgcaaccc-tcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgattttggaccttctgtgtatgag |
231 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| | || |||||| ||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
2081176 |
tccttggttccaaatgatgcaaaatgtcccacccatttcattaacagcgtgattttacacgagcgttagagcttgattttggaccttctgtgtatgag |
2081273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University