View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5967_low_4 (Length: 368)
Name: NF5967_low_4
Description: NF5967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5967_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 13205462 - 13205808
Alignment:
| Q |
7 |
tccaagaatatcaaatatttcttcgaagttggttcctttaccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacg |
106 |
Q |
| |
|
||||| || |||||| ||||||| |||||||| || | |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
13205462 |
tccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattcttgcctgcaatgtggtcaacattcaatggatcacttgtaacg |
13205561 |
T |
|
| Q |
107 |
ataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13205562 |
ataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtgac |
13205661 |
T |
|
| Q |
207 |
gcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13205662 |
gcaaaagcgacggtagcataccaattattggcaaattaattggtaaacttccatatctattgcgtctccagtagtagatgtataggaagattagaatggc |
13205761 |
T |
|
| Q |
307 |
tagtaatcctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13205762 |
tagtaatcctccaatacactgaattattgacattgtagatttactaa |
13205808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 13008191 - 13008537
Alignment:
| Q |
7 |
tccaagaatatcaaatatttcttcgaagttggttcctttaccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacg |
106 |
Q |
| |
|
||||| || |||||| ||||||| |||||||| || | |||||||||||| ||||||||| ||| |||| |||||||||| |||||||||||| || |
|
|
| T |
13008191 |
tccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattcttgctcgcgatgtgatcaacattcatcggatcactggtaccg |
13008290 |
T |
|
| Q |
107 |
ataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgac |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| ||||||| || ||||||||| ||| | | |||| |
|
|
| T |
13008291 |
ataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtgat |
13008390 |
T |
|
| Q |
207 |
gcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggc |
306 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||||||||| || | ||| ||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
13008391 |
gcaaaatcccaggtagcataccaattattggccaattaattggtgcaaattcatctctattgcgtctccaatagtagatgtataggaagattaggatggc |
13008490 |
T |
|
| Q |
307 |
tagtaatcctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13008491 |
tacaaatcctccaatacactgaattatggacattgtagatttactaa |
13008537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 47 - 347
Target Start/End: Original strand, 13214519 - 13214819
Alignment:
| Q |
47 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
146 |
Q |
| |
|
||||| |||||| ||||||||| |||||||| | |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13214519 |
ccgtaattgccaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagcttgtgtttgtgaaccaggctcactcaaatcgaa |
13214618 |
T |
|
| Q |
147 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
246 |
Q |
| |
|
| ||||||||| | |||||||| ||||||| |||||||||||| ||| | | | ||||||||| || |||||||||||||||||||||| |||| || |
|
|
| T |
13214619 |
acattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacaggggacgcaaaatcgtcggtagcataccaattattggccaattgat |
13214718 |
T |
|
| Q |
247 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggctagtaatcctccaatacactgaattattgacattgtagat |
346 |
Q |
| |
|
||||||| || ||| |||||||| |||||| |||| ||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13214719 |
tggtacaatttcatctctattgcatctccaatagtggatgtatagcaagattaggattgctagaaatcctccaatacactgaattattgacattgtagat |
13214818 |
T |
|
| Q |
347 |
t |
347 |
Q |
| |
|
| |
|
|
| T |
13214819 |
t |
13214819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 13069377 - 13069054
Alignment:
| Q |
7 |
tccaagaatatcaaatatttcttcgaagttggttcctttaccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacg |
106 |
Q |
| |
|
||||| || |||||| ||||||| |||||||| || | |||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||| | |
|
|
| T |
13069377 |
tccaaaaaaatcaaaaatttctttgaagttggacccccttccgtagttgccaaaattcttgctcgcaatgtgttcaacattcattggatcactggtacca |
13069278 |
T |
|
| Q |
107 |
ataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| |||||||||| | |||||||||||||||| || ||||||||| ||| | | || || |
|
|
| T |
13069277 |
ataaagcttgtgtttgtgaaccaggctcctccaaatctaaacgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttac |
13069178 |
T |
|
| Q |
207 |
gcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggc |
306 |
Q |
| |
|
|| ||||| | |||||||||||| ||||||| |||||||||||||| | ||| ||||||||||||||| |||| |||||||| ||||||||| ||||| |
|
|
| T |
13069177 |
acataagcgccagtagcataccaaatattggccaattaattggtacaaattcatctctattgcgtctccaatagtggatgtataagaagattaggatggc |
13069078 |
T |
|
| Q |
307 |
tagtaatcctccaatacactgaat |
330 |
Q |
| |
|
| |||||||||| ||||||||| |
|
|
| T |
13069077 |
tgccaatcctccaacacactgaat |
13069054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 109 - 353
Target Start/End: Original strand, 13162629 - 13162873
Alignment:
| Q |
109 |
aaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgc |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| | ||||||||||||| ||||||| | |||| ||||||||||||| | | | | ||| || |
|
|
| T |
13162629 |
aaagcttgtgtttgtgaaccagggtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgc |
13162728 |
T |
|
| Q |
209 |
aaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggcta |
308 |
Q |
| |
|
|||| | ||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
13162729 |
aaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctctattgcgtctccaatagtaaatgtataggaagattaggatggcta |
13162828 |
T |
|
| Q |
309 |
gtaatcctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13162829 |
caaatcctccaatacactgaattattgacattatagatttactaa |
13162873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 308
Target Start/End: Original strand, 13102031 - 13102292
Alignment:
| Q |
47 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
146 |
Q |
| |
|
||||| |||| | ||||||||| |||||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13102031 |
ccgtaattgctaaaattcttgctcgcaatgtgattaacattcattggatcactggtaccgataaagccagtgtttgtgaaccaggctccttcaaatcgaa |
13102130 |
T |
|
| Q |
147 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaattaat |
246 |
Q |
| |
|
| |||||||||| | ||| |||| ||||||| || ||||||||| ||| | | |||||||||||||| ||||||||||||||||||||| |||| || |
|
|
| T |
13102131 |
acgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtgacgcaaaagcgctggtagcataccaattattggccaattgat |
13102230 |
T |
|
| Q |
247 |
tggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatggcta |
308 |
Q |
| |
|
||||| | || ||| |||||| ||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
13102231 |
tggtaaaatttcatctctattacgtctccgacagtagatgtataggaagattaggatggcta |
13102292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 13130932 - 13131180
Alignment:
| Q |
105 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtg |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| | |||||||||| || ||||||| | |||| |||||||||| | | | | | || |
|
|
| T |
13130932 |
cgataaagcttgtgtttgtgaaccagggcccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggagagatg |
13131031 |
T |
|
| Q |
205 |
acgcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatg |
304 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||| |||||||| ||| | | ||| ||||||||||||| | |||| |||||||||||||||||| ||| |
|
|
| T |
13131032 |
acacaaaaatgacggtagtataccaattattggccaattaattagtaaaagttcatctctattgcgtctcgaatagtagatgtataggaagattaggatg |
13131131 |
T |
|
| Q |
305 |
gctagtaatcctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13131132 |
gttacaaatcctccaatacactgaattattgacattgtagttttactaa |
13131180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 105 - 349
Target Start/End: Original strand, 13095503 - 13095747
Alignment:
| Q |
105 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtg |
204 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| || | |||| |||||||||| | ||||||| | |||| ||||||||||||| | | | | || |
|
|
| T |
13095503 |
cgataaagcttatgtcagtgaaccagggccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggagagatg |
13095602 |
T |
|
| Q |
205 |
acgcaaaagcgacggtagcataccaattattggcaaattaattggtacacttccatttctattgcgtctccagtagttgatgtataggaagattagaatg |
304 |
Q |
| |
|
| |||||| | |||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
13095603 |
atgcaaaaatgccggtagcataccaattattggccaattaattggtacaaattcatctctattgcgtctccaatagtagatgtataggaagattaggatg |
13095702 |
T |
|
| Q |
305 |
gctagtaatcctccaatacactgaattattgacattgtagattta |
349 |
Q |
| |
|
| ||| || ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13095703 |
gttagaaaccctccaatacactgaattattgacattgtagtttta |
13095747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 30367251 - 30367121
Alignment:
| Q |
47 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
146 |
Q |
| |
|
|||||||||||| ||||||||| || |||| || ||| |||| ||||||| ||| |||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
30367251 |
ccgtagttgccaaaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcgaa |
30367152 |
T |
|
| Q |
147 |
atgttcctccattacctttcaaaattaaggt |
177 |
Q |
| |
|
| |||||||||| || |||||||| |||||| |
|
|
| T |
30367151 |
acgttcctccatgacatttcaaaactaaggt |
30367121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 13005892 - 13006057
Alignment:
| Q |
74 |
atgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaatta |
173 |
Q |
| |
|
|||| |||||| |||| ||||||| |||| ||||||||||||| |||||| | |||| ||||| |||||||| |||||||||| | || |||| | |
|
|
| T |
13005892 |
atgtggtcaacgttcattggatcagtggtcgcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctccatgatgctttaaaacaa |
13005991 |
T |
|
| Q |
174 |
aggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggca |
239 |
Q |
| |
|
||||| |||||||||| || ||| ||| |||| ||||| | ||||||||||||| ||| ||||| |
|
|
| T |
13005992 |
aggttgcataatcatgtaaattggatagatgactcaaaaacctcggtagcataccatttactggca |
13006057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 13102457 - 13102499
Alignment:
| Q |
311 |
aatcctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
13102457 |
aatcctccaatacactgaattatagacattgaagatttactaa |
13102499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 353
Target Start/End: Complemental strand, 13136469 - 13136431
Alignment:
| Q |
315 |
ctccaatacactgaattattgacattgtagatttactaa |
353 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13136469 |
ctccaagacactgaattattgacattgtagatttactaa |
13136431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
| Q |
119 |
tttgtgaaccaggctccttcaaatcgaaatgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacg |
218 |
Q |
| |
|
||||||||||| | ||||| ||| |||| || ||||||| | |||||||| ||||||| |||||||||| | ||| ||| || | |||||| || | |
|
|
| T |
19278233 |
tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg |
19278134 |
T |
|
| Q |
219 |
gtagcataccaattattggcaaatt |
243 |
Q |
| |
|
||||||| |||||||||||| |||| |
|
|
| T |
19278133 |
gtagcatgccaattattggccaatt |
19278109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 31376544 - 31376740
Alignment:
| Q |
47 |
ccgtagttgccagaattcttgcccgcaatgtagtcaacattcaatggatcactggtaacgataaagcttgtgtttgtgaaccaggctccttcaaatcgaa |
146 |
Q |
| |
|
|||||||||||| ||||||||| || |||| || ||| || | ||||||| || ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31376544 |
ccgtagttgccaaaattcttgcttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttgtgaaccagggtccttcaaatcgaa |
31376643 |
T |
|
| Q |
147 |
atgttcctccattacctttcaaaattaaggttacataatcatggaatttgaataagtgacgcaaaagcgacggtagcataccaattattggcaaatt |
243 |
Q |
| |
|
| ||||| ||| ||||||||||| |||||| |||| | || ||| || | | |||||||| | |||| |||||||||||| ||||||| |||| |
|
|
| T |
31376644 |
acattccttcatgacctttcaaaactaaggtgacatggttattgaaatttgacagatgacgcaacaccgacagtagcataccaactattggccaatt |
31376740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 31385366 - 31385313
Alignment:
| Q |
105 |
cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccat |
158 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||| |||| |||||||||| |
|
|
| T |
31385366 |
cgataaagcttgtgtttgtgaaccaggatacttcgaattgaaacgttcctccat |
31385313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University