View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5968-Insertion-2 (Length: 235)

Name: NF5968-Insertion-2
Description: NF5968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5968-Insertion-2
NF5968-Insertion-2
[»] chr2 (6 HSPs)
chr2 (8-235)||(32183764-32183995)
chr2 (8-74)||(32178893-32178959)
chr2 (8-74)||(32175755-32175821)
chr2 (12-64)||(32159482-32159534)
chr2 (114-226)||(4880582-4880690)
chr2 (162-229)||(20262616-20262682)
[»] chr4 (4 HSPs)
chr4 (114-227)||(51702290-51702405)
chr4 (114-207)||(8069743-8069837)
chr4 (139-227)||(26070895-26070981)
chr4 (114-227)||(42912555-42912664)
[»] chr8 (2 HSPs)
chr8 (118-211)||(2199653-2199747)
chr8 (97-227)||(26130272-26130401)
[»] chr7 (1 HSPs)
chr7 (114-225)||(26285876-26285986)
[»] chr3 (1 HSPs)
chr3 (126-211)||(51925708-51925793)
[»] chr1 (2 HSPs)
chr1 (127-227)||(24886774-24886873)
chr1 (114-203)||(27292133-27292223)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 32183764 - 32183995
Alignment:
Q  8 agatcagacgtttgaatttctagatcagctgactgatatattctgcaaaaattattggctgcaatgaagnnnnnnnn-----aaaactaaagaaaaattc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             ||| ||||||||||||||    
T  32183764 agatcagacgtttgaatttctagatcagctgactgatatattctgcaaaagttattggctgcaatgaagtttttttttttttaaagctaaagaaaaattc 32183863  T
Q  103 aaataaaataagaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtgg 201  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||     
T  32183864 aaataaaataagaagtacaagaatgggggacatgaacctgacccataaaaccacaagctgaaaccctaacgggtgatacatcaaatcggtacacaagtg- 32183962  T
Q  202 taaataaaaagcaactctaaacaacaattcagcg 235  Q
     |||||||||||||||||||||||||||||||||    
T  32183963 -aaataaaaagcaactctaaacaacaattcagcg 32183995  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 32178893 - 32178959
Alignment:
Q  8 agatcagacgtttgaatttctagatcagctgactgatatattctgcaaaaattattggctgcaatga 74  Q
    |||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  32178893 agatcagacggttgaaattctagatcagctgactgatatggtctgcaaaaattattggctgaaatga 32178959  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 32175755 - 32175821
Alignment:
Q  8 agatcagacgtttgaatttctagatcagctgactgatatattctgcaaaaattattggctgcaatga 74  Q
    |||||||| ||||||| ||||||||||||||||||||||  |||| |||||||||||||| ||||||    
T  32175755 agatcagatgtttgaaattctagatcagctgactgatatggtctgaaaaaattattggctacaatga 32175821  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 32159482 - 32159534
Alignment:
Q  12 cagacgtttgaatttctagatcagctgactgatatattctgcaaaaattattg 64  Q
    |||||| ||| | ||||||||||||||||||||||| ||||||||||||||||    
T  32159482 cagacggttggaattctagatcagctgactgatatagtctgcaaaaattattg 32159534  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 4880690 - 4880582
Alignment:
Q  114 gaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtggtaaataaaaag 212  Q
    ||||||||||| |||||| |||||||||||| | ||||||||||| |||||||| |||| ||||||||| ||| | |||  |||||||||||| ||||      
T  4880690 gaagtacaagattggggg-catgaacctgactcgtaaaaccacaacctcaaaccttaacgggtgatacaacaagttagt--acaagtggtaaagaaaa-- 4880596  T
Q  213 caactctaaacaac 226  Q
    ||||| ||||||||    
T  4880595 caactttaaacaac 4880582  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 20262616 - 20262682
Alignment:
Q  162 caaaccctaacg-gtgatacatcaaatcagtacacaagtggtaaataaaaagcaactctaaacaacaat 229  Q
    |||||||||||| |||||||| |||||||| | |||||||||||| ||||  |||||||||||||||||    
T  20262616 caaaccctaacgagtgatacaacaaatcagaatacaagtggtaaagaaaa--caactctaaacaacaat 20262682  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 51702405 - 51702290
Alignment:
Q  114 gaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccc-taacg-gtgatacatcaaatcagtacacaagtggtaaataaaaa 211  Q
    |||||||||| ||||||| ||||| || |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||    
T  51702405 gaagtacaaggctggggggcatgagccagacccagaaaaccacaagctcaaacccctaacgagtgatacatcaaatcagtacacaagtggtgaatagaaa 51702306  T
Q  212 gcaactctaaacaaca 227  Q
     |||||||||||||||    
T  51702305 acaactctaaacaaca 51702290  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 8069837 - 8069743
Alignment:
Q  114 gaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtggtaaata 207  Q
    |||||||||||||||||| ||||||||||||||  | |||||| | ||||||||||||| ||||||||| |||||  |||||| |||||||||||    
T  8069837 gaagtacaagactggggggcatgaacctgacccggataaccaccaactcaaaccctaacgggtgatacaacaaatatgtacactagtggtaaata 8069743  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 26070981 - 26070895
Alignment:
Q  139 cctgacccataaaaccacaagctcaaaccctaacggtg-atacatcaaatcagtacacaagtggtaaataaaaagcaactctaaacaaca 227  Q
    ||||||||||||| |||||  ||||||||||||||| | ||||| ||||||||||||||||||||||| ||||  |||||||||||||||    
T  26070981 cctgacccataaa-ccacagactcaaaccctaacgggggatacaacaaatcagtacacaagtggtaaagaaaa--caactctaaacaaca 26070895  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 42912664 - 42912555
Alignment:
Q  114 gaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtggtaaataaaaag 212  Q
    ||||||||||| | |||| |||||||||| ||| ||||||||||| ||||||||||||| ||| ||||| ||||| |||  |||||||||||| ||||      
T  42912664 gaagtacaagattagggg-catgaacctggcccgtaaaaccacaacctcaaaccctaacgggttatacaacaaattagt--acaagtggtaaagaaaa-- 42912570  T
Q  213 caactctaaacaaca 227  Q
    |||||||||||||||    
T  42912569 caactctaaacaaca 42912555  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 2199653 - 2199747
Alignment:
Q  118 tacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtggtaaataaaaa 211  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  2199653 tacaagactggggggcatgaacctgacccagaaaaccacaaactcaaaccctaacgggtgatacagcaaatcagtacacaagtggtatataaaaa 2199747  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 26130401 - 26130272
Alignment:
Q  97 aaattcaaataaaataagaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacac 195  Q
    ||||| |||||||| | ||||||||||||||||||||||||| |||||||| | ||||| |  ||||||||| ||| |||| |||  ||| ||||||||     
T  26130401 aaattaaaataaaa-aggaagtacaagactgggggacatgaatctgacccagataaccatagactcaaacccaaacgggtggtacgacaattcagtacaa 26130303  T
Q  196 aagtggtaaataaaaagcaactctaaacaaca 227  Q
    ||||||||||| |||| |||||||||||||||    
T  26130302 aagtggtaaatgaaaa-caactctaaacaaca 26130272  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 26285876 - 26285986
Alignment:
Q  114 gaagtacaagactgggggacatgaacctgacccataaaaccacaagctcaaaccctaac-ggtgatacatcaaatcagtacacaagtggtaaataaaaag 212  Q
    ||||||||||| | |||| ||||||||||||| | | |||||||  |||||||||||||  |||||||| ||||||| |||||||||||| || ||||      
T  26285876 gaagtacaagattagggggcatgaacctgacctagagaaccacagactcaaaccctaacatgtgatacaacaaatcattacacaagtggttaagaaaa-- 26285973  T
Q  213 caactctaaacaa 225  Q
    |||||||||||||    
T  26285974 caactctaaacaa 26285986  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 51925708 - 51925793
Alignment:
Q  126 tgggggacatgaacctgacccataaaaccacaagctcaaaccctaacgg-tgatacatcaaatcagtacacaagtggtaaataaaaa 211  Q
    |||||| ||||||||||||||| | |||||||  ||||||||||||| | ||||||| ||||||||||||   ||||||||||||||    
T  51925708 tggggggcatgaacctgaccca-ataaccacagactcaaaccctaacagatgatacaacaaatcagtacaagtgtggtaaataaaaa 51925793  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 24886873 - 24886774
Alignment:
Q  127 gggggacatgaacctgacccataaaaccacaagctcaaaccctaacgg-tgatacatcaaatcagtacacaagtggtaaataaaaagcaactctaaacaa 225  Q
    ||||| ||||||||||||||| | ||||||     ||||||||||||| ||||||| |||||||| ||||||| |||||| ||||  |||||||||||||    
T  24886873 ggggggcatgaacctgacccagataaccaccgatacaaaccctaacggatgatacaacaaatcagaacacaagcggtaaagaaaa--caactctaaacaa 24886776  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 27292133 - 27292223
Alignment:
Q  114 gaagtacaagactg-ggggacatgaacctgacccataaaaccacaagctcaaaccctaacggtgatacatcaaatcagtacacaagtggta 203  Q
    |||||||||||||| |||| ||| |||||||||||  |||||||||   ||| || |||||| |||||| |||||||| ||| ||||||||    
T  27292133 gaagtacaagactgagggggcataaacctgacccagtaaaccacaaaaacaacccgtaacggggatacaacaaatcagcacataagtggta 27292223  T

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