View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5968-Insertion-3 (Length: 139)
Name: NF5968-Insertion-3
Description: NF5968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5968-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 2618877 - 2618748
Alignment:
| Q |
10 |
tttttgcaggaaccaccaagtaatttgtccccattcttgcaaacaaagtcacacacttcacttagagttgggccaacacatgaactagcgaagaaagaac |
109 |
Q |
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| T |
2618877 |
tttttgcaggaaccacctagtaatttgtccccattcttgcaaacaaagtcacacacttcacttagagttgggccaacacatgaactagcgaagaaagaac |
2618778 |
T |
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| Q |
110 |
tctttttctcacaaccttcaatctgcacca |
139 |
Q |
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| T |
2618777 |
tctttttctcacaaccttcaatctgcacca |
2618748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 2630557 - 2630457
Alignment:
| Q |
39 |
cccattcttgcaaacaaagtcacacacttcacttagagttgggccaacacatgaactagcgaagaaagaactctttttctcacaaccttcaatctgcacc |
138 |
Q |
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| T |
2630557 |
cccatgcttgcaaataaagtcacaattttggcttagaattgggccaacgcatggaccaacgaagtcaggactctttttctcacaaccttcaatttgcacc |
2630458 |
T |
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| Q |
139 |
a |
139 |
Q |
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| T |
2630457 |
a |
2630457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 2624215 - 2624182
Alignment:
| Q |
106 |
gaactctttttctcacaaccttcaatctgcacca |
139 |
Q |
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| T |
2624215 |
gaactctttttctcacaaccttcaatcttcacca |
2624182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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