View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5969-Insertion-1 (Length: 993)
Name: NF5969-Insertion-1
Description: NF5969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5969-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 710; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 9 - 775
Target Start/End: Complemental strand, 26475746 - 26474980
Alignment:
| Q |
9 |
attacatggtttcatcaagagtaaactttcggtttggtccctagacctatgaagcatagacaccaaatacaaggcactgacacctaaacaccgatttgag |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26475746 |
attacatggtttcatcaagagtaaactttcggtttggtccctagacctatgaagcatagacaccaaatacaaggcactgacacctaaacaccgatttgag |
26475647 |
T |
|
| Q |
109 |
aaaatggaagtaattaaatataataaatcgtctttaaactattctccatctatcaacttagtacgtgaactatcnnnnnnncttctattttgaaagtaac |
208 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26475646 |
aaaatggaagtgattaaatataataaatcgtctttaaactattctccatctatcaacttagtacgtgaactatctttttttcttctattttgaaagtaac |
26475547 |
T |
|
| Q |
209 |
tcgtgctaacttcattaatcgagaatagtttagcaactatttttaaacttaactagttcagcaagcaaattgaaggtttgctcattttattaatgattac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26475546 |
tcgtgctaacttcattaatcgagaatagtttagcaactatttttaaacttaactagttcagcaagcaaattgaaggtttgctcattttattaatgattac |
26475447 |
T |
|
| Q |
309 |
tgatgatatgatatgcttcatcatatatttcactgacatttctaatatgttaatgaagccgaggcaatcctacttggttttcaacattaccttgtgatgc |
408 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26475446 |
tgataatatgatatgcttcatcatatattgcactgacatttttaatatgttaatgaagccgaggcaatcctacttggttttcaacattaccttgtgatgc |
26475347 |
T |
|
| Q |
409 |
ttggtacaactgttctaattccaagctctctagttcctcagatgggaggaggaaatgtaagtcttagaatcaatctaaaaggaagaagcaagtggttatt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26475346 |
ttggtacaactgttctaattccaagctctctagttcctcagatgggaggaggaaatgtaagtcttagaatcaatctaaaaggaagaagcaagtggttatt |
26475247 |
T |
|
| Q |
509 |
aatattattgtttggttcataaatctaatgaaggttcaatcatgtttcaataggaagagaaagcaaaagtgattcagactctactatttgtggctggaat |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26475246 |
aatattattgtttggttcataaatctaatgaaggttcaatcatgtttcaataggaagagaaagcaaaagtgattcagactctactatttgtggctggaat |
26475147 |
T |
|
| Q |
609 |
taacacatttttccaaacaacatttggcactcgtctacctgcggttattggaggatcctacacttttgtgccaacaactatttcaattattttggctggt |
708 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26475146 |
taacacatttttccaaacaacatttggaactcgtctacctgcggttattggaggatcctacacttttgtgccaacaactatttcaattattttggctggt |
26475047 |
T |
|
| Q |
709 |
agatatagtgacattgtgaatcctcatgaggttggtttctcacaaattatagttgattagatcttca |
775 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
26475046 |
agatatagtgacattgtgaatcctcatgaggttggtttctcgcaaatttaagttgattatatcttca |
26474980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 808 - 993
Target Start/End: Complemental strand, 26474958 - 26474773
Alignment:
| Q |
808 |
ctattatgtaatcattgttgtttaatttacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaa |
907 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26474958 |
ctattatgtaatcattgttgtctaattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaa |
26474859 |
T |
|
| Q |
908 |
attgttcttggctttagtggactttggcgcaatgtagtgaggttcttgaacatgtcctatctaaatcacttgatcattttgctctt |
993 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26474858 |
attgttcttggctttagtggactttggcgcaatgtagtgaggttcttgaacatgtcctatctaaatcacttgatcattttgctctt |
26474773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 815 - 932
Target Start/End: Original strand, 27801312 - 27801429
Alignment:
| Q |
815 |
gtaatcattgttgtttaatttacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaaattgttc |
914 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||| ||||| || |||||||||||| ||||| ||||||||||||| ||||| | || |||||| ||| |
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| T |
27801312 |
gtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctccaaattattc |
27801411 |
T |
|
| Q |
915 |
ttggctttagtggacttt |
932 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
27801412 |
ttggctttagtggccttt |
27801429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 655 - 775
Target Start/End: Original strand, 27801163 - 27801283
Alignment:
| Q |
655 |
attggaggatcctacacttttgtgccaacaactatttcaattattttggctggtagatatagtgacattgtgaatcctcatgaggttggtttctcacaaa |
754 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| |||| ||| ||||||| |||||||||| |||||||||| ||||||||||||||||| |||||| |
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|
| T |
27801163 |
attggagcatcctacactttcgtgcctacaacactttccattcttttggccggtagatataagcacattgtgaaccctcatgaggttggtttgtcacaag |
27801262 |
T |
|
| Q |
755 |
ttatagttgattagatcttca |
775 |
Q |
| |
|
| |||||||| ||||||||| |
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| T |
27801263 |
ctttagttgatcagatcttca |
27801283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 15306381 - 15306495
Alignment:
| Q |
359 |
taatgaagccgaggcaatcctacttggttttcaacattaccttgtgatgcttggtacaactgttctaattccaagctctctagttcctcagatgggagga |
458 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||| | |||||| | || ||||||||| | || |||| |||||||| | |||||||||||| |
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|
| T |
15306381 |
taatgaagcggaggcaataatgcttggttttcaacattacttggtgatgttgggcacaactgttttgataccaactgctctagtttcacagatgggagga |
15306480 |
T |
|
| Q |
459 |
ggaaatgtaagtctt |
473 |
Q |
| |
|
||||||||||||||| |
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|
| T |
15306481 |
ggaaatgtaagtctt |
15306495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 704
Target Start/End: Original strand, 15306572 - 15306725
Alignment:
| Q |
551 |
tgtttcaataggaagagaaagcaaaagtgattcagactctactatttgtggctggaattaacacatttttccaaacaacatttggcactcgtctacctgc |
650 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| | || | ||||||||||| || |||||||| | |||||| ||||| ||||| ||||| || |
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|
| T |
15306572 |
tgtttcaataggaagaaaaagcaatgctgattcaaaatcatttgtttgtggctggtataaacacattaatacaaacattgtttgggactcgactaccagc |
15306671 |
T |
|
| Q |
651 |
ggttattggaggatcctacacttttgtgccaacaactatttcaattattttggc |
704 |
Q |
| |
|
||||| |||||||||| || ||||||||||| || |||||||| || ||||| |
|
|
| T |
15306672 |
agttatcggaggatcctttacctttgtgccaactaccatttcaatcatcttggc |
15306725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 22214451 - 22214406
Alignment:
| Q |
125 |
aatataataaatcgtctttaaactattctccatctatcaacttagt |
170 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
22214451 |
aatataataaatagtccctaaactattctccatctatcaaattagt |
22214406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 44063782 - 44063871
Alignment:
| Q |
381 |
cttggttttcaacattaccttgtgatgcttggtacaactgttctaattccaagctctctagttcctcagatgggaggaggaaatgtaagt |
470 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||| || |||||||| | ||||| ||||||||||||||||| || ||||||||| |
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|
| T |
44063782 |
cttggtttccaacattatcttgtgatgctgggtacaaccgtgctaattcctacttctcttgttcctcagatgggaggtggcaatgtaagt |
44063871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 560 - 617
Target Start/End: Original strand, 44064027 - 44064084
Alignment:
| Q |
560 |
aggaagagaaagcaaaagtgattcagactctactatttgtggctggaattaacacatt |
617 |
Q |
| |
|
|||| |||||||||||||| || || || ||||| |||||||||||||| |||||||| |
|
|
| T |
44064027 |
aggaggagaaagcaaaagttatccaaacactactctttgtggctggaatcaacacatt |
44064084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 845 - 942
Target Start/End: Original strand, 35265597 - 35265694
Alignment:
| Q |
845 |
cagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacacttcaaattgttcttggctttagtggactttggcgcaatgt |
942 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||| ||||| ||||||||||| |||||||| || || ||||||||||| |||||||| ||||| |
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|
| T |
35265597 |
cagaaattcaagaagataatgagggcagtccagggtgctcttattgttgcttcaactcttcaaatagtactaggctttagtggcctttggcgtaatgt |
35265694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 35264959 - 35265047
Alignment:
| Q |
381 |
cttggttttcaacattaccttgtgatgcttggtacaactgttctaattccaagctctctagttcctcagatgggaggaggaaatgtaag |
469 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| |||||||| || ||||| | |||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
35264959 |
cttggatttcaacattttcttgtaatgcttggcacaactgtgctgattcccactgctcttgttccccagatgggaggtggaaatgtaag |
35265047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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