View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5969-Insertion-2 (Length: 909)
Name: NF5969-Insertion-2
Description: NF5969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5969-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 795; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 9 - 907
Target Start/End: Complemental strand, 48051868 - 48050972
Alignment:
| Q |
9 |
gcgattaactactcgattggattgctaattagaaaaaattgtactgtcttaatgcatctatgtttcggtctctttaattattgatttgtttcaatttagt |
108 |
Q |
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| T |
48051868 |
gcgattaactactctattggattgctaattagaaaaaattgtactgtcttaatgcatctatgtttcggtctctttaattattgatttgtttcaatttagt |
48051769 |
T |
|
| Q |
109 |
tatcaaattgcgattaattactcagttccattgctagttactaattagnnnnnnnttgaactgtctgaataatgcgtttgctttgtttttgtagatgaaa |
208 |
Q |
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| T |
48051768 |
tatcaaattgcgattaattactcagttccattgctagttactaattagaaaaaaattgaactgtctgaataatgcgtttgctttgtttttgtagatgaaa |
48051669 |
T |
|
| Q |
209 |
tgtcaacagagctagcttcgttatcgactgatataatatttagaacagttgcgatttacgatgatcgtagatcgagaaaagccgtggatgatgtgattgt |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48051668 |
tgtcaacagagctagcttcgttattgactgatataatatttagaacggttgcgatttacgatgatcgtagatcgagaaaagccgtggatgatgtgattgt |
48051569 |
T |
|
| Q |
309 |
taagtctttaagcggaacggttttcatgaagacatttgcagcagcacttgttcagagtatggaaaagcagttgaagtctcaatctcatgttggctgctat |
408 |
Q |
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| T |
48051568 |
caagtctttaagcggaacggttttcatgaagacatttgcagcagcacttgttcagagtatggaaaagcagttgaagtctcaatctcatgttggctgctat |
48051469 |
T |
|
| Q |
409 |
agacttcccagttggtcttgtttgcttttgagcgaaagcaagttttccactgtttcgaagaatgctttgtgtagagtagcttcggggcaagcttctttgc |
508 |
Q |
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| T |
48051468 |
agacttctcagttggtcttgtttgcttttgagcaaaagcaagttttccactgtttcgaagaatgctttgtgtagagttgcttcggggcaagcttctttgc |
48051369 |
T |
|
| Q |
509 |
ttaatctcgtttggcgaagatcttttcgtgagagaagggcttgcaagaaaaagatttttcatttattcaaagaggtttagttaaattcaaccgaagttat |
608 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48051368 |
ttaatcttgtttggcgaagatcttttcgtgagagaagggcttgcaagaaaaagatttttcatttattcaaagaggtttagttaaatttaaccgaagttat |
48051269 |
T |
|
| Q |
609 |
tttgataacaataaattgctaatgttgtgttggttatttagttttatatattaaagaaattattctaatttaaatgtatatgcttgtttcgctttcagtt |
708 |
Q |
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| T |
48051268 |
tttgataacaataaattgctaatgttgtgttggttatttagttttatatattaaagaaattattctaatttaaatgtatatgcttgttttgctttcagtt |
48051169 |
T |
|
| Q |
709 |
accggatatttataaagtctacgtacaagaagtgaaaaatggctcaattccttataaggatagtccaagaattattgttgttgttgttggaattttcaac |
808 |
Q |
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| T |
48051168 |
accggatatttataaagtctacgtacaagaagtgaaaaatggctcaattccttataaggatagtcc-agaattattgttgttgttgttggaattttcaac |
48051070 |
T |
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| Q |
809 |
cagatcatcatctttatttggagaattcaaggtgagttcgtagtattgtaaaaactttc-ttaattttggtttcatggggattaaatttcgtcttctagg |
907 |
Q |
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| T |
48051069 |
cagatcatcatctttatttggagaattcaaggtgagttcgtagtattgt-aaaactttctttaattttgttttcat-gggattaatttccgtcttctagg |
48050972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 48052099 - 48052031
Alignment:
| Q |
10 |
cgattaactactcgattggattgctaattagaaaaaattgtactgtcttaatgcatctatgtttcggtc |
78 |
Q |
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||||||| ||||| ||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
48052099 |
cgattaattactctatttgatttcgaattagaaaaaattgcactgtcttaatgcatctatgttttggtc |
48052031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 48052193 - 48052087
Alignment:
| Q |
29 |
attgctaattagaaaaaattgtactgtcttaatgcat----ctatgtttcggtctctttaattattgatttgtttcaatttagttatcaaattgcgatta |
124 |
Q |
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|||||||||||||||||| || ||||||| ||||||| |||||||| | || ||||| ||| || || |||||||||||||||||| || |||||| |
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| T |
48052193 |
attgctaattagaaaaaaatgcactgtctaaatgcatgcatctatgttttgttcactttacttagtgtttggtttcaatttagttatcagcttacgatta |
48052094 |
T |
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| Q |
125 |
attactc |
131 |
Q |
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| T |
48052093 |
attactc |
48052087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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