View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5969-Insertion-5 (Length: 287)
Name: NF5969-Insertion-5
Description: NF5969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5969-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 41909369 - 41909092
Alignment:
| Q |
9 |
catataaacaaggtgtatattaatattaataagccaagtttttggccacttacccaatgtggcgctaattcttggaaaacttaatcagtttggtctaaaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41909369 |
catatgaacaaggtgtatattaatattaataagccaagtttttggccacttacccaatgtggcactaattcttggaaaacttaatcagtttggtctaaaa |
41909270 |
T |
|
| Q |
109 |
gaagaatgctactctatatactctagcgtagaaaggactcagcgctagtataactaatcacaagaaattgttggtattagtaaaactaatcacaaggtgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41909269 |
gaagaatgctactctatatactctagcgtagaaaggactcggcgctagtataactaatcacaagaaattgttggtattagtaaaactaatcacaaggtgt |
41909170 |
T |
|
| Q |
209 |
atacatatatactataggagaagcggtatttatacaacaatttaatgataattttttaataattttctctcttatact |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
41909169 |
atacatatatactataggagaagcggtatttatacaacaatttgatgataactttttaataattttctctctcatact |
41909092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 40258214 - 40258265
Alignment:
| Q |
235 |
tatttatacaacaatttaatgataattttttaataattttctctcttatact |
286 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
40258214 |
tatttatacaaccattttatgataatttttgaataactttctctctcatact |
40258265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 7990088 - 7990139
Alignment:
| Q |
235 |
tatttatacaacaatttaatgataattttttaataattttctctcttatact |
286 |
Q |
| |
|
||||| |||| | |||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
7990088 |
tatttgtacatctattttatgataattttttgataattttctctcttatact |
7990139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 11635626 - 11635669
Alignment:
| Q |
235 |
tatttatacaacaatttaatgataattttttaataattttctct |
278 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11635626 |
tatttgtacaacaattttatgataattttttaataactttctct |
11635669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 6408134 - 6408179
Alignment:
| Q |
233 |
ggtatttatacaacaatttaatgataattttttaataattttctctc |
279 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
6408134 |
ggtatttatacaaccatttaatgataatttttaaat-attttctctc |
6408179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 37515927 - 37515976
Alignment:
| Q |
237 |
tttatacaacaatttaatgataattttttaataattttctctcttatact |
286 |
Q |
| |
|
|||||||||| |||| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
37515927 |
tttatacaactattttatgataattttttgacaattttctctctcatact |
37515976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University