View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5969_high_2 (Length: 289)
Name: NF5969_high_2
Description: NF5969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5969_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 41909098 - 41909369
Alignment:
| Q |
1 |
agagagaaaattattaaaaaattatcattaaattgttgtataaataccgcttctcctatagtatatatgtatacaccttgtgattagttttactaatacc |
100 |
Q |
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| T |
41909098 |
agagagaaaattattaaaaagttatcatcaaattgttgtataaataccgcttctcctatagtatatatgtatacaccttgtgattagttttactaatacc |
41909197 |
T |
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| Q |
101 |
aacaatttcttgtgattagttatactagcgctgagtcctttctacgctagagtatatagagtagcattcttcttttagaccaaactgattaagttttcca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41909198 |
aacaatttcttgtgattagttatactagcgccgagtcctttctacgctagagtatatagagtagcattcttcttttagaccaaactgattaagttttcca |
41909297 |
T |
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| Q |
201 |
agaattagcgccacattgggtaagtggccaaaaacttggcttattaatattaatatacaccttgtttatatg |
272 |
Q |
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| T |
41909298 |
agaattagtgccacattgggtaagtggccaaaaacttggcttattaatattaatatacaccttgttcatatg |
41909369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40258259 - 40258214
Alignment:
| Q |
1 |
agagagaaaattattaaaaaattatcattaaattgttgtataaata |
46 |
Q |
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| T |
40258259 |
agagagaaagttattcaaaaattatcataaaatggttgtataaata |
40258214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 11635669 - 11635626
Alignment:
| Q |
3 |
agagaaaattattaaaaaattatcattaaattgttgtataaata |
46 |
Q |
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| T |
11635669 |
agagaaagttattaaaaaattatcataaaattgttgtacaaata |
11635626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 6408179 - 6408134
Alignment:
| Q |
2 |
gagagaaaattattaaaaaattatcattaaattgttgtataaatacc |
48 |
Q |
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|||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
6408179 |
gagagaaaat-atttaaaaattatcattaaatggttgtataaatacc |
6408134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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