View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5969_high_5 (Length: 254)
Name: NF5969_high_5
Description: NF5969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5969_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 26475746 - 26475520
Alignment:
| Q |
17 |
attacatggtttcatcaagagtaaactttcggtttggtccctagacctatgaagcatagacaccaaatacaaggcactgacacctaaacaccgatttgag |
116 |
Q |
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| T |
26475746 |
attacatggtttcatcaagagtaaactttcggtttggtccctagacctatgaagcatagacaccaaatacaaggcactgacacctaaacaccgatttgag |
26475647 |
T |
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| Q |
117 |
aaaatggaagtaattaaatataataaatcgtctttaaactattctccatctatcaacttagtacgtgaactatcnnnnnnncttctattttgaaagtaac |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26475646 |
aaaatggaagtgattaaatataataaatcgtctttaaactattctccatctatcaacttagtacgtgaactatctttttttcttctattttgaaagtaac |
26475547 |
T |
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| Q |
217 |
tcgtgctaacttcattaatcgagaata |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26475546 |
tcgtgctaacttcattaatcgagaata |
26475520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 22214451 - 22214406
Alignment:
| Q |
133 |
aatataataaatcgtctttaaactattctccatctatcaacttagt |
178 |
Q |
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|||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
22214451 |
aatataataaatagtccctaaactattctccatctatcaaattagt |
22214406 |
T |
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