View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970-Insertion-11 (Length: 390)

Name: NF5970-Insertion-11
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970-Insertion-11
NF5970-Insertion-11
[»] chr5 (2 HSPs)
chr5 (8-390)||(4756643-4757025)
chr5 (37-390)||(4748808-4749158)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 4757025 - 4756643
Alignment:
Q  8 agattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4757025 agattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatgg 4756926  T
Q  108 tagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756925 tagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctc 4756826  T
Q  208 aatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaat 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756825 aatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaat 4756726  T
Q  308 gatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4756725 gatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgt 4756643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 390
Target Start/End: Complemental strand, 4749158 - 4748808
Alignment:
Q  37 aagcaaatcaatgtacaaattttcaaccaaaccaaggtccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaagcaaactttctc 136  Q
    ||||||||||||||||||||  ||||||||| |||||||  | || ||||||||||| |||| |||||  | ||||||||| |||||||  |||||| |     
T  4749158 aagcaaatcaatgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttg 4749059  T
Q  137 atctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaatgagaccaatataagttgacaatgctt 236  Q
      |||||| |||||||||   ||||||||| |||||||| | |||||||||| ||||||  || |||| || ||||||||||||||| |  ||||   ||    
T  4749058 gcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttctatgagaccaatataattgtacaa---tt 4748962  T
Q  237 cgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatcttttacctgtaaggaccatggttga 336  Q
    ||| ||||||||| ||||| ||| |||    || ||||||||| || || | | |||| ||||||||||||||| |||| |||| |||  |||| | |||    
T  4748961 cgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctga 4748862  T
Q  337 atgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgt 390  Q
    |  |||||||||   ||||||||  || |||||  |||| || |||||||||||    
T  4748861 agcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgt 4748808  T

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