View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970-Insertion-13 (Length: 331)
Name: NF5970-Insertion-13
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-13 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 37595639 - 37595317
Alignment:
| Q |
9 |
agaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatttaatttattgaaacaataccttcttttagtgatttatttcatttatctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595639 |
agaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatttaatttattgaaacaataccttcttttagtgatttatttcatttatctt |
37595540 |
T |
|
| Q |
109 |
agaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagccataaagaaactgtgtacttttttgctacatttgttacgaggttaacacaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37595539 |
agaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagccataaagaaactgtgtacttttttgctacatttgttatgaggttaacacaa |
37595440 |
T |
|
| Q |
209 |
attcactagactattccattttctatttttgtgtgtttcatattcaattttctatgtaagaggcacaagtgccacatcaattagtgtcatgtggatctgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595439 |
attcactagactattccattttctatttttgtgtgtttcatattcaattttctatgtaagaggcacaagtgccacatcaattagtgtcatgtggatctgc |
37595340 |
T |
|
| Q |
309 |
aaggaaacaaattatctccatta |
331 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37595339 |
aaggaaacaaattatctccatta |
37595317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University