View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970-Insertion-15 (Length: 283)
Name: NF5970-Insertion-15
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 28752930 - 28753204
Alignment:
| Q |
9 |
gttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagac |
108 |
Q |
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| T |
28752930 |
gttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcagctaagcaaatctgagac |
28753029 |
T |
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| Q |
109 |
tgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttc |
208 |
Q |
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| T |
28753030 |
tgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgtttcc |
28753129 |
T |
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| Q |
209 |
taccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctg |
283 |
Q |
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| T |
28753130 |
taccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctg |
28753204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 28753163 - 28753291
Alignment:
| Q |
155 |
tttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattatt |
254 |
Q |
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| T |
28753163 |
tttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctgccacgccgtgaagttgaattattagcagcaatttgggaattgtt |
28753262 |
T |
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| Q |
255 |
gaaacaaccattagaagtattgtaagctg |
283 |
Q |
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| T |
28753263 |
gaaacaatcattaggagtattataagctg |
28753291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 44865817 - 44865586
Alignment:
| Q |
15 |
gccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagactgcatc |
114 |
Q |
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| T |
44865817 |
gccggtaaacttttcaaattctgaaaagaagtatatcatgtcactggagaaactttctcctgcaggatccttggcagctaagcatagttgagactgcatc |
44865718 |
T |
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| Q |
115 |
tcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccac |
214 |
Q |
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| T |
44865717 |
tcatctaccgatacattctgtaactggatgtggtttccagtttggtaattattggaacaatcatcaaaagcattgtaagctagctttcgtttccttcctc |
44865618 |
T |
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| Q |
215 |
gccgtgaagttgaattattagcagcaatttgg |
246 |
Q |
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| T |
44865617 |
gccgtgaagttgagttattaccagaaatttgg |
44865586 |
T |
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