View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970-Insertion-2 (Length: 936)
Name: NF5970-Insertion-2
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 120 - 711
Target Start/End: Complemental strand, 4223858 - 4223267
Alignment:
| Q |
120 |
tcatcttactttttggcgaagcaaatcagccgcgacaaaggtggtcgaacaacccgaaacaaagctacaaagaagattcgcaacaaacaagcaacgggtc |
219 |
Q |
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| T |
4223858 |
tcatcttactttttggcgaagcaaatcagccgcgacaaaggtggtcgaacaacccaaaacaaagctataaagaagattcgcaacaaacaagcaacgggtc |
4223759 |
T |
|
| Q |
220 |
tgcacaacatatttcaaaaagagaacctagaaacaaaaattgaaatgaatccagaaagtgaggcaaacaacttgcaaccgagcatccatatctgaaaact |
319 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4223758 |
tgcacaacctattttaaaaagagaacctagaaacaaaaattgaaatgaatccagaaagtgaggcaaacaacttgcaacctagcatccatatctgaaaact |
4223659 |
T |
|
| Q |
320 |
aaaactagaactcgaccaccaaaaggaccatccgatgaaaaacaacctccagcgagtcggaaagatacataagtatggaacacctatcaaaaattaactt |
419 |
Q |
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| T |
4223658 |
aaaacaagaactcgagcactgaaaggaccagccgatgaaaaacaacctccagcgagtcggaaagatacataagtatggaacacctatcaaaaattaactt |
4223559 |
T |
|
| Q |
420 |
gaatcaatgcaatgacaatcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagctaggcctaggttat |
519 |
Q |
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| T |
4223558 |
gaatcaatgcaatgacgatcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagctaggcctaggttat |
4223459 |
T |
|
| Q |
520 |
gaaccacagtaacccataacgttgaagaaccatatcctaaatagtgaatcgcgtaacaaataagggaatccataaaaccaaccacaagaacatcgattac |
619 |
Q |
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| T |
4223458 |
gaaccacagtaacccataacattgaagaaccatatcctaaatactgaatcgcataacacataagggaatccataaaaccaaccacaagaacatcgattac |
4223359 |
T |
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| Q |
620 |
ccatttcagaaggaaggcagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacaatggagattgt |
711 |
Q |
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| T |
4223358 |
ccatttcagaaggaaggcagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacagtggagattgt |
4223267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 704 - 910
Target Start/End: Complemental strand, 4211420 - 4211225
Alignment:
| Q |
704 |
gagattgtgtgcaccaccaacggcgtaggatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatggtcggaggtggttgtagg |
803 |
Q |
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| T |
4211420 |
gagattgtgtgcaccgccgacggcgtaagatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatgatcggaggtggttgtagg |
4211321 |
T |
|
| Q |
804 |
atcttatctctctaaggttaaaaatcaacttcatctgttatgctcaattcaatttatctttcaattatcttttagttaaatgtatttaaatacaaatcaa |
903 |
Q |
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| T |
4211320 |
atcttctctctctaaggttaaaaatcaacttcatctgttatgctcaattcaatttat-----------cttttacttaaatgtatttaaatacaaatcaa |
4211232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 4223965 - 4223908
Alignment:
| Q |
13 |
ttgtatagttacaaaattgcacgttctttctattaatcaaaaacaaaattgttgtttt |
70 |
Q |
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| T |
4223965 |
ttgtatagttacaaaattgctcgttctttctattaatcaaaaacaaaattgttgtttt |
4223908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 789 - 909
Target Start/End: Complemental strand, 4235093 - 4234971
Alignment:
| Q |
789 |
ggaggtggttgtag-gatcttatctctctaaggttaaaaatcaacttcatctgttatgctcaattcaatt--tatctttcaattatcttttagttaaatg |
885 |
Q |
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||||||||||||| | ||||||||||||| | | |||| ||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
4235093 |
ggaggtggttgtaacgctcttatctctctatgctcaaaattcaacttcatcggttatgctcaattcaatttatatctttcaa-tatcttttatgtaaatt |
4234995 |
T |
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| Q |
886 |
tatttaaatacaaatcaacttata |
909 |
Q |
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| | | |||| ||||||||||||| |
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| T |
4234994 |
tttgttaatataaatcaacttata |
4234971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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