View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970-Insertion-4 (Length: 850)
Name: NF5970-Insertion-4
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 305 - 850
Target Start/End: Original strand, 12164795 - 12165338
Alignment:
| Q |
305 |
ggtaactaacaagaaaaataaaataaagtagggtttgtattatctacaatcaacgtcaacacgcattcacgcagtcagtaatttaaatgtttgaatgtgt |
404 |
Q |
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| T |
12164795 |
ggtaaataacaagaaaaataaaataaagtagggtttgtattatctacaatcaacgtcaacacgcattcacacactcagtaatttaaatgtttgaatgtgt |
12164894 |
T |
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| Q |
405 |
ttcgtattaatcgtagacaattgaaatccaaaaaattgaactatcggaaaaagttgaaataatgatattaattagagatggnnnnnnntaaaatcgatca |
504 |
Q |
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| T |
12164895 |
ttcgtattaattgtagacaattaaaatccaaaaaattgaactatcggaaaaagttgaaataatgatattaattagagatggaaaaaa-taaaatcgatca |
12164993 |
T |
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| Q |
505 |
ttaaattttgtt-tctttaatagtaaacgattaaattaaagacaaatcatgtannnnnnnnncttttgtctctaaatttatatcgctatttcaacttttt |
603 |
Q |
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| T |
12164994 |
ttaaattttgatgtctttaatagtaaacgattaaattaaagacaaatcatgtattttttt---ttttgtctctaaatttatatcgttatttcaacttttt |
12165090 |
T |
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| Q |
604 |
-ctatagtaagtnnnnnnntgaaaatttcttcaatcctcctccacatgacacacttcaaatcacatgatagccaaacatgaccttgagtagtatagctag |
702 |
Q |
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| T |
12165091 |
tctatagtaagtaaaaaaatgaaaatttcttcaatcctcctccacatgacacacttcaaatcacatgatagccaaacatgaccttgagtagtatagctag |
12165190 |
T |
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| Q |
703 |
caccaccaaataatactaaaaagcaagattgaaaactaggtcnnnnnnngtgaggtagaaattgttgctaggtgcatgcatttaaattctaggtcttgtt |
802 |
Q |
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| T |
12165191 |
caccaccaaataatactaaaaagcaagattgaaaactaggtctttttttgtgaggtagaaattgttgctaggtgcatgcatttaaattctaggtcttgtt |
12165290 |
T |
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| Q |
803 |
gtcatcatagccttctcttatttggttcttcagatgagttgttggtat |
850 |
Q |
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| T |
12165291 |
gtcatcatagccttctcttatttggttcttcaaatgagttgttggtat |
12165338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 12164497 - 12164748
Alignment:
| Q |
7 |
catgagcatgaccaagaaggtttcaaaataaataatttttcccacttgaaaagatgaaagggctagtcttatcttttttatcatcaatctactcacacta |
106 |
Q |
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| T |
12164497 |
catgagcatgaccaagaaggtttcaaaataaataatttttcccacttgaaaagatgaaagggctagtcttatcttttttatcatcaatctactcacacta |
12164596 |
T |
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| Q |
107 |
ctcaactttcgagtgatcatgtcttcatatagtgaaatgtacttgttgcaactattgcaaccttctgttcctcagctttctgtcccatccaccaatattc |
206 |
Q |
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| T |
12164597 |
ctcaactttcgagtgatcatgtcttcatatagtgaaatgtacttgttgcaactattgcaaccttctgttcctcagctttctgtcccatccaccaatattc |
12164696 |
T |
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| Q |
207 |
caaaaggaatgtgggactcagtttggtttgcttccaatcaaccaaccagcac |
258 |
Q |
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| T |
12164697 |
caaaaggaatgtgggactcagtttggtttgcttccaatcaaccaaccagcac |
12164748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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