View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970-Insertion-5 (Length: 725)

Name: NF5970-Insertion-5
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970-Insertion-5
NF5970-Insertion-5
[»] chr8 (1 HSPs)
chr8 (9-725)||(41301601-41302332)


Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 9 - 725
Target Start/End: Original strand, 41301601 - 41302332
Alignment:
Q  9 cctaagtcatgaaccaaatacacattaattgagcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttcc 108  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301601 cctaagtcatgaaccaaatacacattaattgcgcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttcc 41301700  T
Q  109 acggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnnng-atttattcaaacacaattgtatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  41301701 acggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacacaattgtatat 41301800  T
Q  208 gtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggtttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301801 gtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggtttt 41301900  T
Q  308 gtctaatatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaattattttaatg 407  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41301901 gtctaatatgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaattattttaatg 41302000  T
Q  408 atccaatgataaatagtttgtgcataatgtaagaccatc-tatctcatttatgcatcatataattggcctccaaaaatatgta-------ttaagctggn 499  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||       |||||||||     
T  41302001 atccaatgataaatagtttgtgcataatgtaagaccttcgtatctcatttatgcatcatataattggcctccaaaaatatgtattactatttaagctgg- 41302099  T
Q  500 nnnnnnnnnnnatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatg 599  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41302100 ---gtttttttatatgaaatcttatatgctcattctcgacccatcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatg 41302196  T
Q  600 atgagattcttgaaagaaagaaagttccactataagaaaaacac----------ccgattactcccaaaatttaaaatatttcttttttgggaagtatta 689  Q
    |||||| |||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  41302197 atgagactcttgaaagaaagaaagttccactataagaaaaacacaactggttttccgattactcccaaaatttaaaatatttcttttttgggaagtatta 41302296  T
Q  690 aatttattttcctgccctatttttctacgggttacc 725  Q
    ||||||||||||||||||||||||||||||||||||    
T  41302297 aatttattttcctgccctatttttctacgggttacc 41302332  T

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