View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970-Insertion-6 (Length: 610)
Name: NF5970-Insertion-6
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 610
Target Start/End: Original strand, 10070444 - 10071054
Alignment:
| Q |
9 |
agtagtacaacaaaagtagctagcatccaccaaaatgaatgattaatataactttatatctttcagtcatgatccttgaccaaatgtgtcgtttgatata |
108 |
Q |
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| T |
10070444 |
agtagtacaacaaaagtagctagcatccaccaaaatgaatgattaatataactttatatctttcagtcatgatccttgaccaaatgtgtcgtgtgatata |
10070543 |
T |
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| Q |
109 |
tggcccataagaaagtggagaagctgttatttccttgcactcaaacctctcttgcctttgcttatggttgttgtagagaaataataaggaaggagaaaat |
208 |
Q |
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| T |
10070544 |
tggcccataagaaagtggagaagctgttatttccttgcactcaaacctctcttgcctttgcttatggttgttgtagagaaataataaggaaggagaaaat |
10070643 |
T |
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| Q |
209 |
atcaattgcatggaaaaagagataatatttctatattttaagatatatgataat--------tttggtaaacacaacttagttaatacctataaaaatgt |
300 |
Q |
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| T |
10070644 |
atcaattgcatggaaaaagagataatatttctatattttaagatatataataatttcaaatgtttggtaaacacaacttagttaataactataaaaatgt |
10070743 |
T |
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| Q |
301 |
taatatgcaaacgtcggagttcgaatataannnnnnnnnnnnnnnnnnnnnnnngagtatccaataaaagaaatgattttgtaaaattcaagttttaata |
400 |
Q |
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| T |
10070744 |
taatatgcaaacgtcggagttcgaatataattttttcatttcatttttctttttgagtatccaataaaagaaatgattttgtaaaattcaagttttaata |
10070843 |
T |
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| Q |
401 |
tctactttaataaatgaaaactatacaactaatttgcttaatttaaaaaataaatattttattttatttcttttacatacaatctcatccgaagtaatat |
500 |
Q |
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| T |
10070844 |
tctactttaataaatgaaaactatacaactaatttgcttaatttaaaaaataaatattttattttatttcttttacataaaatctcatccgaagtaatat |
10070943 |
T |
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| Q |
501 |
tttgtacaatcttaatggataataacaaagtaattttcatgtattatc-aatatcatttccatcaatgatatgaatttaaaaggaatattctggcttcca |
599 |
Q |
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| T |
10070944 |
tttgtacaatcttaatggataataacaaagtaattttcatgtattatcaaatatcatttccatcaatgatatgaatttaaaaggaatattctggcttcca |
10071043 |
T |
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| Q |
600 |
catcatatttt |
610 |
Q |
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| T |
10071044 |
catcatatttt |
10071054 |
T |
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