View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970-Insertion-8 (Length: 574)
Name: NF5970-Insertion-8
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 1897910 - 1897589
Alignment:
| Q |
8 |
ataaaccttgggcttaatgatagaaatgttacataaacactctatagaggttttttaccatacacggcgtgtgtgcgatagcggtaatttgcaggtggag |
107 |
Q |
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| T |
1897910 |
ataaaccttgggcataatgatagaaatgttacataaacactcta--gaggttttttaccatacacggcgtgtgtgcgatagcagaaatttgcaggtggag |
1897813 |
T |
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| Q |
108 |
gaagtcatgcgtgcggtctgaatgtccaagctgcccgtgcagattatgtgctaattaatgaggctaaaacgagtgcagtaagcagaaatcgtgcaacaag |
207 |
Q |
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| T |
1897812 |
gaagtcatgcgtgcggtctgaatgtccaggctgcccgtgaagattatgtgctaattaatgaggctaaaacgagtgcagtaagcagaaatcgtgcaacaag |
1897713 |
T |
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| Q |
208 |
ccgagagggtcacgtctgaggaactacaacattgttctgatgctaggggaagtaaaatgtaatttggacgcaacaatcttcaaagataaaatctgtgtta |
307 |
Q |
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| T |
1897712 |
ccgagagggtcacgtctgaggaactacaacattgttctgatgctaggggaagtaaaatgtaatttgggcgcaacaatcttcaaagataaaatctgtgtta |
1897613 |
T |
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| Q |
308 |
gagatgacaaagacaaattcatat |
331 |
Q |
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| T |
1897612 |
gagatgacaaagacaaattcatat |
1897589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 414 - 574
Target Start/End: Complemental strand, 1897495 - 1897334
Alignment:
| Q |
414 |
tagttgttggatgacatagtgggtatcct-gtcttaagttagagtttgatgctattttatgtggttttaaaactgttattcgttcttttccaaactttac |
512 |
Q |
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| T |
1897495 |
tagttgttggatgacatagtgggtatcctagtcttaagttagagtttgatgctattttatgtggttttaaaactgttattcgttgttttccaaactttac |
1897396 |
T |
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| Q |
513 |
tataacttttatccgaaggcaagcaaacaatatgactcatttgtgaactagagtgacattgt |
574 |
Q |
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| T |
1897395 |
tataacttttatccgaaggcaagcaaacaatataactcatttgtgaactagagtgacattgt |
1897334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 1897540 - 1897496
Alignment:
| Q |
333 |
aagcatggggtttaatgcaagctcttctcttgcttatgaatttgg |
377 |
Q |
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| T |
1897540 |
aagcatggggtttaatgcaagctcttctcttgcttatgaatttgg |
1897496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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