View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_10 (Length: 475)
Name: NF5970_high_10
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 465
Target Start/End: Original strand, 41301601 - 41302049
Alignment:
| Q |
20 |
cctaagtcatgaaccaaatacacattaattgagcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttcc |
119 |
Q |
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| T |
41301601 |
cctaagtcatgaaccaaatacacattaattgcgcataaagaaatgggacgtgagagtatatataattctataacttagaaaccagtcataaatctcttcc |
41301700 |
T |
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| Q |
120 |
acggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataannnnnnng--atttattcaaacacaattgtatat |
217 |
Q |
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| T |
41301701 |
acggcgaacaatatagaaaatgttgagaattaactgcattccctcgtcttatctagttaaagataattatttatttatttattcaaacacaattgtatat |
41301800 |
T |
|
| Q |
218 |
gtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggtttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41301801 |
gtagttcagaagacaaaatatatgtgaacggagtattgaaattggagtcagcctcataagaaaatgtaatatacaagtatttattttcatatatggtttt |
41301900 |
T |
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| Q |
318 |
gtctactatgcataagtaagaagatcttgcatcatacacaaatgtctttttcaccattgaattaataaggcgcatcacatcatatctaattattttaatg |
417 |
Q |
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||||| |||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41301901 |
gtctaatatgcataagtaagaagatcttacatcatatacaaatatcttttttaccattgaattaataaggcgcatcacatcatatctaattattttaatg |
41302000 |
T |
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| Q |
418 |
atccaatgataaatagtttgtgcataatgtaagaccatc-tatctcatt |
465 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
41302001 |
atccaatgataaatagtttgtgcataatgtaagaccttcgtatctcatt |
41302049 |
T |
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