View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_12 (Length: 426)
Name: NF5970_high_12
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 41710009 - 41710264
Alignment:
| Q |
11 |
cacagaataaaagatcaattaagggtgaaacaacatttacatgtacataattgctatttttgtagaaaaggcaaatgaatagagtcgagttgtggatttc |
110 |
Q |
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| T |
41710009 |
cacagaataaaagatcaattaagggtgaaacaacatttacatgtacattattgctatttttgtagaaaaggtaaatgaatagagttgatttgtggatttc |
41710108 |
T |
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| Q |
111 |
aatagtatccgtccacatattatgccaaaatgctatatattatttatttacaaaatttcaagttgtgcaatttgtagtaaatgtttccagttcttcaaaa |
210 |
Q |
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| T |
41710109 |
aatagtatccgtccacatattatgccaaa-tgctatatattatttatttacaaaatttcaagtcgtgcaatttgtagtaaatgtttccagttcttgaaaa |
41710207 |
T |
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| Q |
211 |
gaaacctccataagaaaccatcaaacaaaataccttggacaaataaagccaacaaaa |
267 |
Q |
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| T |
41710208 |
gaaacctccataagaaaccatcaaacaaaataccttggacaaataaagccaacaaaa |
41710264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 41710367 - 41710396
Alignment:
| Q |
269 |
ccttcagttaaggagacagatttgaaacta |
298 |
Q |
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| T |
41710367 |
ccttcagttaaggagacagatttgaaacta |
41710396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 14111039 - 14110815
Alignment:
| Q |
14 |
agaataaaagatcaattaagggtgaaacaacatttacatgtacataattgctat-ttttgtagaaaaggcaaatgaatagagtcgagttgtggatttcaa |
112 |
Q |
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| T |
14111039 |
agaataaaagatcaattccgg-tgaaatgacatttacatgtacataattggtaacttttgtacaaaaggtaaatgaatagagttgagttgtggatttcaa |
14110941 |
T |
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| Q |
113 |
tagtatccgtccacatattatgccaaaatgctatatattatttatttacaaaatttcaagttgtgcaatttgtagtaaatgtttccagttcttcaaaaga |
212 |
Q |
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| T |
14110940 |
tagtatccgtccacataatatgccaaa-tgctatatattatttattcacagaatgtcaagttgtgcaatttgtagtaaatgtttccagtactataaaaga |
14110842 |
T |
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| Q |
213 |
aacctccataagaaaccatcaaacaaa |
239 |
Q |
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| T |
14110841 |
aacctccataagaaaccatcaaacaaa |
14110815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 14110634 - 14110524
Alignment:
| Q |
296 |
ctaatatcaaaatcctttataaatttactgttgttactactcatttaagttccttttctagcttctttgcattgcaggtattaagcaagaaaactacctc |
395 |
Q |
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| T |
14110634 |
ctaatatcaaagtcctttataacttcactgttgttgctactcatttaagttccttatctagcctctttacattgcaggtattaagcaagaaaactacctc |
14110535 |
T |
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| Q |
396 |
tatcgcctaaa |
406 |
Q |
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||||||||||| |
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| T |
14110534 |
tatcgcctaaa |
14110524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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