View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_21 (Length: 351)
Name: NF5970_high_21
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 121 - 340
Target Start/End: Complemental strand, 10465881 - 10465662
Alignment:
| Q |
121 |
ttgtccattttcctttactattcaaaaaactccaataaatctgcaacagggtcgtactcgaagtccacccaggttcctctgtaatagtaaatctttcctt |
220 |
Q |
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| T |
10465881 |
ttgtccattttcctttactattcaaaaaactccaataaatctgcaacagggtcgtactcggagtccacccaggttcctctgtaatagtaaatctttcctt |
10465782 |
T |
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| Q |
221 |
gaattcagtggttgatttcaagggttgactgctcagattctcatgagatattattgtttggactttgttttactcttctccatttgactgcaattgtttt |
320 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10465781 |
gaattcagtggttgatttcaagggttgacttctcagattctcatgagatattattgtttggactttgttttactcttctccatttgactgcaattgtttt |
10465682 |
T |
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| Q |
321 |
tgtcccgtcacgtagttcat |
340 |
Q |
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|||||||||||||||||||| |
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| T |
10465681 |
tgtcccgtcacgtagttcat |
10465662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 10465981 - 10465946
Alignment:
| Q |
21 |
atttatttagttaaaataatcacctttttattttct |
56 |
Q |
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| T |
10465981 |
atttatttagttaaaataatcacctttttattttct |
10465946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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