View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_22 (Length: 350)
Name: NF5970_high_22
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 6753340 - 6753021
Alignment:
| Q |
19 |
acctgatagcgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaag |
118 |
Q |
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| T |
6753340 |
acctgatagtgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaag |
6753241 |
T |
|
| Q |
119 |
gaattcaagtaggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatag |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753240 |
gaattcaagtagggccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatag |
6753141 |
T |
|
| Q |
219 |
tgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753140 |
tgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaat |
6753041 |
T |
|
| Q |
319 |
tgcacaatcctcatagccta |
338 |
Q |
| |
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|||||||||||||||||||| |
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| T |
6753040 |
tgcacaatcctcatagccta |
6753021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 1811194 - 1811513
Alignment:
| Q |
19 |
acctgatagcgaatactctcctccacgcacttctgaaggaagaagaatttcattgaaatcacccataagaagccaagggccattaagatgaggtcgtaag |
118 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
1811194 |
acctgatagtgaatactctcctccacgtacttctgaaggaagaagaatttcattgaaatcactcataagaagccaaggaccattaagatgaggtcgtaag |
1811293 |
T |
|
| Q |
119 |
gaattcaagtaggaccaaagatggtcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatag |
218 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811294 |
caattcaaataggaccaaagatgatcacgatttgtaacctgagggctagcataaatagttgacaagtaccaccttactctatccttttctagagctatag |
1811393 |
T |
|
| Q |
219 |
tgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatccctccagagtgtccacgagcttcagaaat |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1811394 |
tgatagattgaaaatagttatctataatctcaatatcatatgtgcaattttgagattttaatatccatatacctccagagtgtccacgagcttcagaaat |
1811493 |
T |
|
| Q |
319 |
tgcacaatcctcatagccta |
338 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
1811494 |
tgcacaattctcatagccta |
1811513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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