View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970_high_24 (Length: 347)
Name: NF5970_high_24
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 37595316 - 37595639
Alignment:
| Q |
5 |
ataatggagataatttgtttccttgcagatccacatgacactaattgatgtggcacttgtgcctcttacatagaaaattgaatatgaaacacacaaaaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595316 |
ataatggagataatttgtttccttgcagatccacatgacactaattgatgtggcacttgtgcctcttacatagaaaattgaatatgaaacacacaaaaat |
37595415 |
T |
|
| Q |
105 |
agaaaatggaatagtctagtgaatttgtgttaacctcgtaacaaatgtagcaaaaaagtacacagtttctttatggctatgccattaattttgacacata |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595416 |
agaaaatggaatagtctagtgaatttgtgttaacctcataacaaatgtagcaaaaaagtacacagtttctttatggctatgccattaattttgacacata |
37595515 |
T |
|
| Q |
205 |
cccttttgattgattttttgttctaagataaatgaaataaatcactaaaagaaggtattgtttcaataaattaaattgaaaattttgaactacactagat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595516 |
cccttttgattgattttttgttctaagataaatgaaataaatcactaaaagaaggtattgtttcaataaattaaattgaaaattttgaactacactagat |
37595615 |
T |
|
| Q |
305 |
acatagaataatgactctatttct |
328 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37595616 |
acatagaataatgactctatttct |
37595639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University