View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_25 (Length: 312)
Name: NF5970_high_25
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_25 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 41583033 - 41582732
Alignment:
| Q |
11 |
attcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggt |
110 |
Q |
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| T |
41583033 |
attcttcattctgctgaaagcttgtgtttcgaagtagcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggt |
41582934 |
T |
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| Q |
111 |
atcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagcatta |
210 |
Q |
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| T |
41582933 |
atcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagcatta |
41582834 |
T |
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| Q |
211 |
ttgaaagaagggaaaagggttgaattagattgagaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaactgtagttgt |
310 |
Q |
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| T |
41582833 |
ttgaaggaagggaaaagggttgaattagattgagaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaattgtagttgt |
41582734 |
T |
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| Q |
311 |
at |
312 |
Q |
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| T |
41582733 |
at |
41582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 41589562 - 41589261
Alignment:
| Q |
11 |
attcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggt |
110 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
41589562 |
attcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcaccgct |
41589463 |
T |
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| Q |
111 |
atcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagcatta |
210 |
Q |
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| T |
41589462 |
atcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaagtacctcatgagaaagagcatta |
41589363 |
T |
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| Q |
211 |
ttgaaagaagggaaaagggttgaattagattgagaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaactgtagttgt |
310 |
Q |
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| T |
41589362 |
ttgaaagaagggaaaatggttgaattagattgagaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaattgtagttgt |
41589263 |
T |
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| Q |
311 |
at |
312 |
Q |
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|| |
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| T |
41589262 |
at |
41589261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 41556902 - 41556616
Alignment:
| Q |
11 |
attcttcattctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggt |
110 |
Q |
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|||||||||||||||| |||||||||||| || | ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||| | |
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| T |
41556902 |
attcttcattctgctggaagcttgtgttttgatgcggcccttttgtgactttagtaccaagaa---gtaatttatcaaataattctgataactcgctgtt |
41556806 |
T |
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| Q |
111 |
atcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaaagagcatta |
210 |
Q |
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| T |
41556805 |
atcatctactttcacttgttctga------------cacattaagaaaatgctcttcttcaaagttttctgtcttaaatacctcatgagaaagagcattg |
41556718 |
T |
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| Q |
211 |
ttgaaagaagggaaaagggttgaattagattgagaaacaaagttattaggagaaaatggaggagtatttgggagtagaaaagggttgtaactgtagttgt |
310 |
Q |
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||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| | | ||||||| |
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| T |
41556717 |
ttgaaagaaggaaaaagggttggattggattgagaaacaaagttattaggaggaaatggaagagtagttgggagtagaaaagggttgttattatagttgt |
41556618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 41570607 - 41570424
Alignment:
| Q |
18 |
attctgctgaaagcttgtgtttcgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcactggtatcacct |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||| || |
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| T |
41570607 |
attctgctgaaagcttgtgttttgaagtggccctttttttactttagtaccaaggactagtaatttatcaaataattctggtaactcgctgttatcatct |
41570508 |
T |
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| Q |
118 |
acatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaattgcgtcatgagaa |
201 |
Q |
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| T |
41570507 |
acatatacttgttctgactcattttgtgacacattgagaaaatgctcttcttcaaagttttctgtcttaatcacctcatgagaa |
41570424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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