View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970_high_29 (Length: 306)
Name: NF5970_high_29
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 13724790 - 13725072
Alignment:
| Q |
17 |
tttaagcaatccataattgtttcccttctaactacacctttttcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttg |
116 |
Q |
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| T |
13724790 |
tttaagcaatccataattgtttcccttctaactacacctttctcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttg |
13724889 |
T |
|
| Q |
117 |
tgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13724890 |
tgatttgatctgtccaaagtggcattgcaatcaccagaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaac |
13724989 |
T |
|
| Q |
217 |
agcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctgtcgatgactccaacatttcctttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13724990 |
agcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttctctatcgatgactccaacatttcctttg |
13725072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 13670086 - 13670328
Alignment:
| Q |
30 |
taattgtttcccttctaactacacctttttcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgt |
129 |
Q |
| |
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|||||||||| |||||||| | |||||||||||||| |||| | ||||| ||||||||||||||| |||||| ||||||||| || | |||||| || |
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| T |
13670086 |
taattgtttcacttctaacaatctctttttcatcagcaatagctctaactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggt |
13670185 |
T |
|
| Q |
130 |
ccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgtt |
229 |
Q |
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|||||||||||||||||||| |||||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
13670186 |
ccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgtt |
13670285 |
T |
|
| Q |
230 |
aacacttgtagttgtgaacaccaattgacaattaaacctttct |
272 |
Q |
| |
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|||||| ||||||| |||||| | || ||||||||||||| |
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| T |
13670286 |
aacactaaaagttgtggacaccatgtcactattaaacctttct |
13670328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 36 - 274
Target Start/End: Original strand, 13695479 - 13695717
Alignment:
| Q |
36 |
tttcccttctaactacacctttttcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaag |
135 |
Q |
| |
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|||| |||||||| || ||||| |||||| || | |||| || |||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
13695479 |
tttctcttctaaccacccctttctcatcaccaacacctttaacagcaattttccatacatcaacaataaactttgcatttgtaatttgatcagtccaaat |
13695578 |
T |
|
| Q |
136 |
tggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgttaacact |
235 |
Q |
| |
|
|||||| ||||||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
13695579 |
tggcatcgcaatcatcggaactcctaaactcaaagcttccaatgttgaattccaaccacaatgtgttacaaaacatccaacagcttcatgtgcaaacact |
13695678 |
T |
|
| Q |
236 |
tgtagttgtgaacaccaattgacaattaaacctttctct |
274 |
Q |
| |
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| ||||||| |||||| | || || |||||||||||| |
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| T |
13695679 |
tctagttgttgacaccatgtcactatcaaacctttctct |
13695717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 13688527 - 13688285
Alignment:
| Q |
30 |
taattgtttcccttctaactacacctttttcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgt |
129 |
Q |
| |
|
|||||||||| |||||||| | |||| ||||||||| |||| | ||||| ||||||||||||||| |||||| ||||||||| || | |||||| || |
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| T |
13688527 |
taattgtttcacttctaacaatctctttctcatcagcaacagctcttactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggt |
13688428 |
T |
|
| Q |
130 |
ccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgtt |
229 |
Q |
| |
|
|||||| ||||||||||||| ||||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
13688427 |
ccaaagcggcattgcaatcagtggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgtt |
13688328 |
T |
|
| Q |
230 |
aacacttgtagttgtgaacaccaattgacaattaaacctttct |
272 |
Q |
| |
|
|||||| ||||||||| |||||| | || ||||||||||||| |
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| T |
13688327 |
aacactagtagttgtggacaccatgtcactattaaacctttct |
13688285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 13694643 - 13694421
Alignment:
| Q |
30 |
taattgtttcccttctaactacacctttttcatcagcatgagctttgactccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgt |
129 |
Q |
| |
|
|||||||||| |||||||| | |||| ||||||||| |||| | ||||| |||||||| |||||| |||||||||||||||| || |||||| || |
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| T |
13694643 |
taattgtttcacttctaacaatctctttctcatcagcaacagctctaactcccattttccacacatcagcaataaactttgcattcgtagcttgatcggt |
13694544 |
T |
|
| Q |
130 |
ccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgtt |
229 |
Q |
| |
|
|||||| ||||||||||||| || || |||| |||||||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||||||||| |
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| T |
13694543 |
ccaaagcggcattgcaatcaatggtacaccaatgctcaaagcttccaacgtcgagttccaaccacagtgtgtcacaaaacatgccacagcttcatgtgtt |
13694444 |
T |
|
| Q |
230 |
aacacttgtagttgtgaacacca |
252 |
Q |
| |
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||||||| || ||||| |||||| |
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| T |
13694443 |
aacacttctaattgtggacacca |
13694421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 30853285 - 30853433
Alignment:
| Q |
79 |
tccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaat |
178 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| |||||||| ||| |||||||||||| | |||||||| | || | |||||||||| |
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|
| T |
30853285 |
tccaattttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaactcctaagctaatagcttccaat |
30853384 |
T |
|
| Q |
179 |
gtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
227 |
Q |
| |
|
|| || |||||||||||||||||||||||||| || | || |||||||| |
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|
| T |
30853385 |
gtggaattccaaccacaatgtgttacaaaacaccctatagattcatgtg |
30853433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 30858611 - 30858688
Alignment:
| Q |
133 |
aagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
210 |
Q |
| |
|
|||||||||||||| | |||||||| | |||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
30858611 |
aagtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaaaaca |
30858688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 30817180 - 30817227
Alignment:
| Q |
163 |
actcaaagcttccaatgtcgagttccaaccacaatgtgttacaaaaca |
210 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
30817180 |
actcaaagcttccaatgtggaattccaaccacaatgtgttacaaaaca |
30817227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 30840307 - 30840431
Alignment:
| Q |
86 |
ttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagt |
185 |
Q |
| |
|
|||||||||||| ||||||| |||||||| || |||| |||| ||| |||| |||||||| ||||| || | || || ||||||||||| |||| |
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|
| T |
30840307 |
ttccaaacatcagcaataaattttgcattggttctttggtctgaccattgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagt |
30840406 |
T |
|
| Q |
186 |
tccaaccacaatgtgttacaaaaca |
210 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
30840407 |
tccatccacaatgtgttacaaaaca |
30840431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 30844816 - 30844940
Alignment:
| Q |
86 |
ttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccggaactccaacactcaaagcttccaatgtcgagt |
185 |
Q |
| |
|
|||||||||||| ||||||| |||||||| || |||| |||| ||| |||| |||||||| ||||| || | || || ||||||||||| |||| |
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| T |
30844816 |
ttccaaacatcagcaataaattttgcattggttctttggtctgaccattgtggtattgcaatagttggaacccctaagcttaatgcttccaatgtggagt |
30844915 |
T |
|
| Q |
186 |
tccaaccacaatgtgttacaaaaca |
210 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
30844916 |
tccatccacaatgtgttacaaaaca |
30844940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 15465747 - 15465789
Alignment:
| Q |
185 |
ttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
227 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
15465747 |
ttccaaccacaatgtgtcacaaaacatccaacagcatcatgtg |
15465789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 15473890 - 15473932
Alignment:
| Q |
185 |
ttccaaccacaatgtgttacaaaacaaccaacagcttcatgtg |
227 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
15473890 |
ttccaaccacaatgtgtcacaaaacatccaacagcatcatgtg |
15473932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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