View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_38 (Length: 282)
Name: NF5970_high_38
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 272
Target Start/End: Complemental strand, 33117167 - 33117020
Alignment:
| Q |
117 |
cattattaatgcagatcctaagaaaatagtcataaaccttaaaactaacataaactaactcaaccattctgagaggcgattctcttattccaaaacttga |
216 |
Q |
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| T |
33117167 |
cattattaatgcagatcctaagaaaatagtcataaac--------taactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttga |
33117076 |
T |
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| Q |
217 |
attgcagagtcctttgttcaagcatcttctccacttcctcaattggaacacctttg |
272 |
Q |
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| T |
33117075 |
attgcagagtcctttgttgaagcatcttctccacttcctcaattggaacacctttg |
33117020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33117275 - 33117205
Alignment:
| Q |
17 |
aatgttgagtagtataattttatattcacaat--------tcattccacttattttttaagctggtaatcc |
79 |
Q |
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| T |
33117275 |
aatgttgagtagcataattttatattcacaatgtggatattcattccacttattttttaagctggtaatcc |
33117205 |
T |
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