View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970_high_39 (Length: 279)
Name: NF5970_high_39
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 40549209 - 40548945
Alignment:
| Q |
18 |
tcaatttctgatacgattagtcatggtgttatgatggtgaataggtgtaaaacgattcatgaggcatactgaaaaggaagaagaaggatggtgctgctga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549209 |
tcaatttctgatacgattagtcatggtgttatgatggtgaataggtgtaaaacgattcatgaggcatactgaaaaggaagaagaaggatggtgctgctga |
40549110 |
T |
|
| Q |
118 |
gtaggatgactttaagctttggaccaaagattgaattcgttata--------------aacgagcttattatttagtatttgattagaaattaatgctaa |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40549109 |
gcaggatgactttaagctttggaccaaagattgaattcgttttagtttttggtcttgggacgagcttattatttagtatttgattagaaattaatgctaa |
40549010 |
T |
|
| Q |
204 |
ttgggtttatgttcatctctaatgtatggctttagccacagtttcaaattgttttttcatctcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
40549009 |
ttgggtttatgttcatctctaatgtatggctttagccacagtttcaaattgttgtttcatttcat |
40548945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University