View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_5 (Length: 578)
Name: NF5970_high_5
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 237 - 560
Target Start/End: Original strand, 1897589 - 1897910
Alignment:
| Q |
237 |
atatgaatttgtctttgtcatctctaacacagattttatctttgaagattgttgcgtccaaattacattttacttcccctagcatcagaacaatgttgta |
336 |
Q |
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| T |
1897589 |
atatgaatttgtctttgtcatctctaacacagattttatctttgaagattgttgcgcccaaattacattttacttcccctagcatcagaacaatgttgta |
1897688 |
T |
|
| Q |
337 |
gttcctcagacgtgaccctctcggcttgttgcacgatttctgcttactgcactcgttttagcctcattaattagcacataatctgcacgggcagcttgga |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
1897689 |
gttcctcagacgtgaccctctcggcttgttgcacgatttctgcttactgcactcgttttagcctcattaattagcacataatcttcacgggcagcctgga |
1897788 |
T |
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| Q |
437 |
cattcagaccgcacgcatgacttcctccacctgcaaattaccgctatcgcacacacgccgtgtatggtaaaaaacctctatagagtgtttatgtaacatt |
536 |
Q |
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| T |
1897789 |
cattcagaccgcacgcatgacttcctccacctgcaaatttctgctatcgcacacacgccgtgtatggtaaaaaacctc--tagagtgtttatgtaacatt |
1897886 |
T |
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| Q |
537 |
tctatcattaagcccaaggtttat |
560 |
Q |
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| T |
1897887 |
tctatcattatgcccaaggtttat |
1897910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 1897341 - 1897495
Alignment:
| Q |
1 |
cactctagttcacaaatgagtcatattgtttgcttgccttcggataaaagttatagtaaagtttggaaaagaacgaataacagttttaaaaccacataaa |
100 |
Q |
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| T |
1897341 |
cactctagttcacaaatgagttatattgtttgcttgccttcggataaaagttatagtaaagtttggaaaacaacgaataacagttttaaaaccacataaa |
1897440 |
T |
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| Q |
101 |
atagcatcaaactctaacttaagac-aggatacccactatgtcatccaacaacta |
154 |
Q |
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| T |
1897441 |
atagcatcaaactctaacttaagactaggatacccactatgtcatccaacaacta |
1897495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 1897496 - 1897540
Alignment:
| Q |
191 |
ccaaattcataagcaagagaagagcttgcattaaaccccatgctt |
235 |
Q |
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| T |
1897496 |
ccaaattcataagcaagagaagagcttgcattaaaccccatgctt |
1897540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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