View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_50 (Length: 250)
Name: NF5970_high_50
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_50 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31009554 - 31009314
Alignment:
| Q |
1 |
aaggtagctaacacaaaaaccacattgcataagaaaaaccataatatcaacgcacaatcttccaaaatggccacttgttgcatagcctaaatcaccaaaa |
100 |
Q |
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| T |
31009554 |
aaggtagctaacacaaaaaccacattgcataagaaaaaccatgatatcaacgcacaatcttccaaaatggccacttgttgcatagcctaaatcaccaaaa |
31009455 |
T |
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| Q |
101 |
gaatttattttggggaaccctacgacagattcaagcctacgacgagtgtatataaggagcatcatgcaatggtaaatgagaaatgaaacagagaaaagca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31009454 |
gaatttattttggggaaccctacgacggattcaagcctacgacgagtgtatataaggagcatcatgcagtggtaaatgagaaatgaaacagagaaaagca |
31009355 |
T |
|
| Q |
201 |
taagcaaccccataatccaacctgttttcgtgaaagtataa |
241 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31009354 |
taagcaaccccatgatccaacctgttttcgtgaaagtataa |
31009314 |
T |
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