View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_high_52 (Length: 249)
Name: NF5970_high_52
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 527103 - 526864
Alignment:
| Q |
12 |
tcatcacttgaaggagcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggag |
111 |
Q |
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| T |
527103 |
tcatcacttgaaggagcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggag |
527004 |
T |
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| Q |
112 |
tattaaacatgttgcttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtaga |
211 |
Q |
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| T |
527003 |
tattaaacatgttgcttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtaga |
526904 |
T |
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| Q |
212 |
agaggtaaa--atatcaattaatgtatttgacagtcacag |
249 |
Q |
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| T |
526903 |
agaggtaaaatatatcaattaatgtatttgacagtcacag |
526864 |
T |
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