View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970_high_53 (Length: 249)
Name: NF5970_high_53
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_high_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 36252973 - 36253108
Alignment:
| Q |
25 |
gtcctctcttgaagggagaatcctccttgcataaggnnnnnnnngaatccttctactccgcattttcactcaaagaatatgttgattgcacaacaaacta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
36252973 |
gtcctctcttgaagggagaatcctccttgcagaaggaaaaaaaagaatccttctactctgaattttcactcaatgaatctgttgat-----aacaaacta |
36253067 |
T |
|
| Q |
125 |
acaactgagcataataaaacgttaatttagttaagtgcttc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36253068 |
acaactgagcataataaaacgttaatttagttaagtgcttc |
36253108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University