View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_1 (Length: 835)
Name: NF5970_low_1
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 20 - 751
Target Start/End: Complemental strand, 43954006 - 43953277
Alignment:
| Q |
20 |
gaggggattctagaagcagataatgatgcatcggcagaagaaaaggatttgggtatgaatcattttgttggtggagtcgtctccagtgagaatgacactc |
119 |
Q |
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| T |
43954006 |
gaggggattctagaagcagataatgatgcatcggcagaagaaaaggatttgggtaggaatcattttgttggtggagtcgtctccagtgagaatgacactc |
43953907 |
T |
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| Q |
120 |
ctgttcaggatagatttattcgccttccagctgaaatacaagataccgaaagaaatcattttgttttgcattttcccgggagaaatgtagatggtgatac |
219 |
Q |
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| T |
43953906 |
ctgttcaggatagatttattcgccttccagctgaaatacaagataccgaaagaaatcattttgttttgcattttcccgggagaaatgtagatggtgatac |
43953807 |
T |
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| Q |
220 |
tagnnnnnnntgaagtctacgaggcagctctcgaagcacaaggaatctcacatcttatgtcttctgaagttgtcaaggcatttttggattctaacaaact |
319 |
Q |
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| T |
43953806 |
tagaaaaaaatgaagtctacgaggcagctctcgaagcacaaggaatctcacatcttatgtcttctgaagttgtcaaggcatttttggattctaacaaact |
43953707 |
T |
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| Q |
320 |
ctctagaggttagatcgagataaggcatttcagcaccattgaaaaatgcttttgtatttaatctgtttttctgttaaactttagaaaataccttatatga |
419 |
Q |
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| T |
43953706 |
ctctagaggttagatcgagataaggcatttcagcaccattgaaaaatgcttttgtatttaatctgtttttctgttaaactttagaaaataccttatatga |
43953607 |
T |
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| Q |
420 |
tgattttattaagnnnnnnnncttcttctcagggatgatgagtttattagtgatcaattcatgttaact--caatatttttgaatgaattattacactag |
517 |
Q |
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| T |
43953606 |
tgattttatt-agttttttttcttcttctcagggatgatgattttattagtgatcaattcatgttaactcacaatatttttgaatga---attacactag |
43953511 |
T |
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| Q |
518 |
ctagcctctcctctgatttatgatactcatacgaacaccctttcaagtttcgtccatctaacgagttattcccttggaaccttgaaaagttcgcttcttc |
617 |
Q |
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| T |
43953510 |
ctagcctctcctctgatttatgatactcatacgaacaccctttcaagtttcgtccatctaacgatttattcccttggaaccttgaaaagttcgcttcttc |
43953411 |
T |
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| Q |
618 |
cagctattatgattttgtagacaatgaactcaccaatgcttaacttaatcaaggtttcaacatgtgcaagagtaaccatgaatgtcctccattattatgc |
717 |
Q |
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| T |
43953410 |
cagctattatgattttgtagacaatgaactcaccaatgcttaacttaatcaaggtttcaacatgtgcatgagtaaccatgagtgtcctccattattatgc |
43953311 |
T |
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| Q |
718 |
tgctcctcggagaaattttgttgtcttatttgac |
751 |
Q |
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| T |
43953310 |
tgctcctcggagaaattttgttgtcttatttgac |
43953277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 751 - 829
Target Start/End: Complemental strand, 43953234 - 43953156
Alignment:
| Q |
751 |
ctaatttatttctatgccatgggatgcaacatcaatgattgtgacaccgccaaataaacatttgttacatattcttcga |
829 |
Q |
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| T |
43953234 |
ctaatttatttctatgccatgggatgcaacatcaatgattgtgacaccgccaaataaacatttgttacattttgttcga |
43953156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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