View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_13 (Length: 414)
Name: NF5970_low_13
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 1858002 - 1857617
Alignment:
| Q |
18 |
gttcaaactagagacaacttaatttggtggtgtgtgctatcacccaatgatcaatcttgtacgggaggttgtgtattgaatcaggataatgatcatttat |
117 |
Q |
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| T |
1858002 |
gttcaaactagagacaacttaatttggtggtgtgtgctatcacccaatgatcaatcttgtacgggaggttatgtattgaatcagaataatgatcatttat |
1857903 |
T |
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| Q |
118 |
gtgttaattgtgatttttacggtaaaatttggtaagtgatttcttattattaaagaacacttccatctcagtctctacacttnnnnnnntcattaaaaac |
217 |
Q |
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| T |
1857902 |
gtgttaattgtgatttttacggtaaaatttggtcagtgatttcttattattaaagaacacttccatctcagtctctacacttaaaaaaatcattaaaaac |
1857803 |
T |
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| Q |
218 |
tggattacatgcacacaacacaatatataaaacaaattacattagaat----tataaactgaaatttgtatgcaaaaactcctaaagtaatgaaatggaa |
313 |
Q |
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| T |
1857802 |
tggattacatgcacacaacacaatatataaaacaaattacattagaattatatataaactgaaatttgtatgcaaaaactcctaaagtaatgaaatggaa |
1857703 |
T |
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| Q |
314 |
ctgcattttgtcttctaacaatcatctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccat |
399 |
Q |
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| T |
1857702 |
ctgcattttgtcttctaacaatcatctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatccgatatctccat |
1857617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 207 - 409
Target Start/End: Complemental strand, 1869408 - 1869205
Alignment:
| Q |
207 |
tcattaaaaactggattacatgcacacaacacaatatataaaacaaattacattagaattataaactgaaatttgtatgcaaaaactcctaaagtaatga |
306 |
Q |
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| T |
1869408 |
tcattaaaaactggattacatgcacacaacacattatataaaacaaattacattagaattataaactgaaatttgtatgcaaaaactcctaaaataatga |
1869309 |
T |
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| Q |
307 |
aatgg-aactgcattttgtcttctaacaatcatctgccatcatccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccatctgtgc |
405 |
Q |
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| T |
1869308 |
aatggttactgcattttgtcttataacaatcatctgccatcatccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtga |
1869209 |
T |
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| Q |
406 |
tgct |
409 |
Q |
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|||| |
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| T |
1869208 |
tgct |
1869205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 164 - 409
Target Start/End: Complemental strand, 1843828 - 1843596
Alignment:
| Q |
164 |
ttattaaagaacacttccatctcagtctctacacttnnnnnnntcattaaaaactggattacatgcacacaacacaatatataaaacaaattacattaga |
263 |
Q |
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| T |
1843828 |
ttattatagaacacttccatctcagtctctacacttatacaa-tcattaaaaactggattacatgcacacaa-------------ataaattaaattaaa |
1843743 |
T |
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| Q |
264 |
attataaactgaaatttgtatgcaaaaactcctaaagtaatgaaatgga-actgcattttgtcttctaacaatcatctgccatcatccaatgttatcagt |
362 |
Q |
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| T |
1843742 |
attataaactgaaatttgtatgcaaaaactcctaaaataatgaaatggttactgcattttgtcttaaaacaatcatctgccatcatccaatgctatcagt |
1843643 |
T |
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| Q |
363 |
acgtgatctttcaagctgtcatatctgatatctccatctgtgctgct |
409 |
Q |
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|| || ||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
1843642 |
acatggtctttcaagctgtcatatccgatatctccatgtgtgatgct |
1843596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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