View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_14 (Length: 413)
Name: NF5970_low_14
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 4756638 - 4757025
Alignment:
| Q |
11 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
110 |
Q |
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| T |
4756638 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
4756737 |
T |
|
| Q |
111 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
210 |
Q |
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| T |
4756738 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattagtctcattgaggatagtgct |
4756837 |
T |
|
| Q |
211 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
310 |
Q |
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| T |
4756838 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
4756937 |
T |
|
| Q |
311 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatct |
398 |
Q |
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| T |
4756938 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgcttaagggaatgaaatcactcgccatcaatct |
4757025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 4748803 - 4749158
Alignment:
| Q |
11 |
cagagacatgtcgtaaggttctaaccgacgaagagaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaat |
110 |
Q |
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|||||||||||||||| || |||| ||||| || |||||||| ||||||||| |||| | |||| ||| |||| |||| ||||||||||||||| |
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| T |
4748803 |
cagagacatgtcgtaatgtactaaaagacgaggaacatctcaagccaggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaat |
4748902 |
T |
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| Q |
111 |
ctcaaattctgaacacaaacgtttgagacgtttaatcacttctcccataaatggtgacgaagcattgtcaacttatattggtctcattgaggatagtgct |
210 |
Q |
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|||| | | || || ||||||||| || ||| ||| ||||| ||||||||| ||||| |||| | ||||||||||||||| || |||| || |
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| T |
4748903 |
atcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctccaataaatggtcacgaa---ttgtacaattatattggtctcatagaagatattgta |
4748999 |
T |
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| Q |
211 |
gtgaaacatttagaagagttgtctaaaatgaacacaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcattt |
310 |
Q |
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|||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||| | |||||| ||||||| ||||||||| | ||||| ||| |
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| T |
4749000 |
gtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttctcaaagaggccaaaaagttcacttttgatgtcatcacttctgtcttctttt |
4749099 |
T |
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| Q |
311 |
cttctgatcgtgatcacgtggaccttggtttggttgaaaatttgtacattgatttgctt |
369 |
Q |
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| ||||||||||| || | ||||||| ||||||||| |||||||||||||||||||| |
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| T |
4749100 |
cctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacattgatttgctt |
4749158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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